Thanks for watching out, I already chanched setup of whole system and can't check how would behave *make quick_test* in this situation. Also I missed, while clonning p4est from git, that it has submodule "cl" and forget to call git submodule init & git submodule update.
DealII setup and it dependencies from scratch now works well, except two dependecies: *hdf5* and *netcdf*(currently i just turned them off). Triend to resolve this in different ways: - Installing libhdf5-dev and/or libnetcdf-dev, (not sure but probably libphdf5-dev, libhdf5-mpi-dev and/or libpnetcdf-dev tried too). - Building parallel version of *hdf5* <https://github.com/live-clones/hdf5> from git(used dependencie on the same mpi as dealii). - And/or building with or without dependencie on hdf5 - *netcdf-c*. <https://github.com/Unidata/netcdf-c> - Also tried build netcdf and hdf5 from tar file from offitial websites(not sure about deatails of building it was some time ago). With regards, Oleg Kmechak On Wednesday, 10 October 2018 03:10:41 UTC+2, Wolfgang Bangerth wrote: > > > Oleg, > I have not seen this error before. In your build directory, can you do > make quick_test > and report back what that shows? It looks like either your libp4est.so is > missing a lot of symbols, or that we don't link with it. > > Although, on second thought, it occurs to me that the functions you show > here > are all functions that were only introduced in a recent version of p4est. > Since compiling deal.II worked, they must have been declared in the > p4est.h > file. But apparently they are not present in libp4est.so. Are you sure > that > the .h file and the .so file correspond to the same p4est version? > > Best > W. > > > On 10/09/2018 12:09 AM, Oleg Kmechak wrote: > > Hello, > > > > DealII was configured with cxx 14, 17, cos previous build without cxx 17 > flag > > was ok(but there was also another build of p4est). > > p4est was configured with next options--enable-mpi --enable-shared > > --disable-vtk-binary --without-blas. These options are recommended here. > > <https://www.dealii.org/developer/external-libs/p4est.html> > > > > And it returns: > > [ 85%] Linking CXX executable ../bin/step-60.debug > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p4est_transfer_fixed_end' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p8est_transfer_custom_begin' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p4est_transfer_fixed_begin' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > `p4est_transfer_fixed' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p8est_transfer_custom_end' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p8est_transfer_fixed_end' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p4est_transfer_custom_end' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p4est_transfer_custom_begin' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > `p4est_transfer_custom' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > > `p8est_transfer_fixed_begin' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > `p8est_transfer_custom' > > ../lib/libdeal_II.g.so.9.1.0-pre: undefined reference to > `p8est_transfer_fixed' > > collect2: error: ld returned 1 exit status > > examples/CMakeFiles/step-60.debug.dir/build.make:220: recipe for target > > 'bin/step-60.debug' failed > > make[3]: *** [bin/step-60.debug] Error 1 > > CMakeFiles/Makefile2:8632: recipe for target > > 'examples/CMakeFiles/step-60.debug.dir/all' failed > > make[2]: *** [examples/CMakeFiles/step-60.debug.dir/all] Error 2 > > CMakeFiles/Makefile2:339: recipe for target > 'CMakeFiles/examples.dir/rule' failed > > make[1]: *** [CMakeFiles/examples.dir/rule] Error 2 > > Makefile:238: recipe for target 'examples' failed > > make: *** [examples] Error 2 > > > > **//___^ > > > > -- > > The deal.II project is located at http://www.dealii.org/ > > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > > --- > > You received this message because you are subscribed to the Google > Groups > > "deal.II User Group" group. > > To unsubscribe from this group and stop receiving emails from it, send > an > > email to [email protected] <javascript:> > > <mailto:[email protected] <javascript:>>. > > For more options, visit https://groups.google.com/d/optout. > > > -- > ------------------------------------------------------------------------ > Wolfgang Bangerth email: [email protected] > <javascript:> > www: http://www.math.colostate.edu/~bangerth/ > > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
