Hi,
I'm trying to build version 9.0.1 from source on my Mac. I tried to build
using the deal.ii terminal from the dealii-9.0.0.dmg, figuring it would be
easier to configure using all the spack libraries, etc. It builds, but
fails several tests when I run make test, and I can't install it.
The following tests FAILED:
7 - step-petsc.debug (Failed)
9 - lapack.debug (Failed)
10 - umfpack.debug (Failed)
13 - arpack.debug (Failed)
Errors while running CTest
I need PETSc, P4EST and MPI, but not any of the other included packages
given in the .dmg distribution, so I could shut off many of those, but I
will need to get it to pass the PETSC tests I assume.
I'll attach my detailed.log and quicktests.log. If anyone can suggest a
next step toward diagnosing this, I would appreciate it.
Thanks,
Jonathan
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /usr/local
# CMAKE_SOURCE_DIR:
/Users/matthejl/Library/dealii/sources/dealii-9.0.1
# (version 9.0.1)
# CMAKE_BINARY_DIR:
/Users/matthejl/Library/dealii/sources/dealii-9.0.1/build
# CMAKE_CXX_COMPILER: AppleClang 10.0.0.10001145 on platform Darwin
x86_64
#
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
# CMAKE_C_COMPILER:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
# CMAKE_Fortran_COMPILER: /opt/local/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fPIC -Wall -Wextra
-Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch
-Woverloaded-virtual -Wno-deprecated-declarations -Qunused-arguments
-Wno-unsupported-friend -Wno-undefined-var-template -openmp-simd -std=c++17
-std=c++17 -ftemplate-depth=1024
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -fstrict-aliasing
-Wno-unused-local-typedefs
# DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS:
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES: m
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
# DEAL_II_COMPILER_VECTORIZATION_LEVEL: 1
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# DEAL_II_WITH_ADOLC set up with external dependencies
# ADOLC_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# ADOLC_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# ADOLC_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib64/libadolc.dylib
# DEAL_II_WITH_ARPACK set up with external dependencies
# ARPACK_LINKER_FLAGS =
# ARPACK_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libarpack.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libopenblas.dylib;m;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi.dylib
# DEAL_II_WITH_ASSIMP set up with external dependencies
# ASSIMP_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# ASSIMP_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# ASSIMP_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libassimp.dylib
# DEAL_II_WITH_BOOST set up with external dependencies
# BOOST_VERSION = 1.67.0
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_USER_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# BOOST_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# BOOST_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_iostreams-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_serialization-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_system-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_thread-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_regex-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_chrono-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_date_time-mt.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libboost_atomic-mt.dylib
# ( DEAL_II_WITH_CUDA = OFF )
# DEAL_II_WITH_CXX14 = ON
# DEAL_II_WITH_CXX17 = ON
# DEAL_II_WITH_GMSH set up with external dependencies
# GMSH_EXE =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/bin/gmsh
# DEAL_II_WITH_GSL set up with external dependencies
# GSL_VERSION = 2.4
# GSL_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# GSL_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# GSL_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libgsl.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libgslcblas.dylib
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_WITH_64BIT_BLAS_INDICES = OFF
# LAPACK_LINKER_FLAGS =
# LAPACK_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libopenblas.dylib;m
# DEAL_II_WITH_METIS set up with external dependencies
# METIS_VERSION = 5.1.0
# METIS_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# METIS_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# METIS_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmetis.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi.dylib
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 3.1
# MPI_C_COMPILER =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/bin/mpicc
# MPI_CXX_COMPILER =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/bin/mpicxx
# MPI_Fortran_COMPILER =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/bin/mpif90
# MPI_CXX_FLAGS =
# MPI_LINKER_FLAGS =
-L/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/hwloc-1.11.9-woah2hlwexlt3tfh7bzpua3z2l3pvxx5/lib
-L/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/openmpi-3.0.1-nno3ymyqwhhe2xpw7ozmdhsrw7ncgyvg/lib
# MPI_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/openmpi-3.0.1-nno3ymyqwhhe2xpw7ozmdhsrw7ncgyvg/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# MPI_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/openmpi-3.0.1-nno3ymyqwhhe2xpw7ozmdhsrw7ncgyvg/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# MPI_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_cxx.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_usempif08.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_usempi_ignore_tkr.a;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_mpifh.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi.dylib
# DEAL_II_WITH_MUPARSER set up with external dependencies
# MUPARSER_VERSION = 2.2.5
# MUPARSER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# MUPARSER_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmuparser.dylib
# DEAL_II_WITH_NANOFLANN set up with external dependencies
# NANOFLANN_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# NANOFLANN_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# DEAL_II_WITH_NETCDF set up with external dependencies
# NETCDF_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# NETCDF_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libnetcdf_c++.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libnetcdf.dylib
# DEAL_II_WITH_OPENCASCADE set up with external dependencies
# OPENCASCADE_VERSION = 6.9.1
# OPENCASCADE_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include/oce
# OPENCASCADE_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include/oce
# OPENCASCADE_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKBO.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKBool.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKBRep.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKernel.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKFeat.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKFillet.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKG2d.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKG3d.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKGeomAlgo.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKGeomBase.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKHLR.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKIGES.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKMath.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKMesh.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKOffset.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKPrim.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKShHealing.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKSTEP.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKSTEPAttr.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKSTEPBase.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKSTEP209.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKSTL.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKTopAlgo.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libTKXSBase.dylib
# DEAL_II_WITH_P4EST set up with external dependencies
# P4EST_VERSION = 2.0
# P4EST_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# P4EST_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# P4EST_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libp4est.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsc.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libopenblas.dylib;m;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi.dylib
# DEAL_II_WITH_PETSC set up with external dependencies
# PETSC_VERSION = 3.9.0.0
# PETSC_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/mumps-5.1.1-3odpqz746fvaawxf6we7gegwjhnqwa6s/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/hypre-2.14.0-oegruwwqzmdopxmlsc5l23rja4zpqj5p/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/hdf5-1.10.1-clwz66jwa6qs4fsmzrdjlznfyihjzhrq/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/parmetis-4.0.3-pp2qcaqlhz6743g3n3qol3gvogwga6hd/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/metis-5.1.0-q7s4esd3j3nvc7l5eur27r5qkdzsgmca/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/zlib-1.2.11-jgaeca4brdhqqd3tk4vsy7etd7azclu5/include
# PETSC_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/mumps-5.1.1-3odpqz746fvaawxf6we7gegwjhnqwa6s/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/hypre-2.14.0-oegruwwqzmdopxmlsc5l23rja4zpqj5p/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/hdf5-1.10.1-clwz66jwa6qs4fsmzrdjlznfyihjzhrq/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/parmetis-4.0.3-pp2qcaqlhz6743g3n3qol3gvogwga6hd/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/metis-5.1.0-q7s4esd3j3nvc7l5eur27r5qkdzsgmca/include;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/zlib-1.2.11-jgaeca4brdhqqd3tk4vsy7etd7azclu5/include
# PETSC_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libpetsc.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libcmumps.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libdmumps.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsmumps.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libzmumps.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmumps_common.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libpord.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libscalapack.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libHYPRE.a;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libopenblas.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libhdf5_hl.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libhdf5.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libparmetis.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmetis.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libz.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_usempif08.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_usempi_ignore_tkr.a;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_mpifh.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-9.1.0-apple/gcc-7.3.0-pf57afdqc36whgmxh7fesdqjlr2tajel/lib/libgcc_ext.10.5.dylib;m;/usr/lib/libc++.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi_cxx.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi.dylib;/System/Library/Frameworks/System.framework;dl
# ( DEAL_II_WITH_SCALAPACK = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_SUNDIALS set up with external dependencies
# SUNDIALS_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# SUNDIALS_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# SUNDIALS_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsundials_idas.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsundials_arkode.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsundials_kinsol.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsundials_nvecserial.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsundials_nvecparallel.dylib
# DEAL_II_WITH_THREADS set up with external dependencies
# TBB_VERSION = 8.0
# THREADS_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# THREADS_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# THREADS_LIBRARIES =
debug;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libtbb_debug.dylib;optimized;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libtbb.dylib
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with external dependencies
# UMFPACK_VERSION = 5.7.6
# UMFPACK_LINKER_FLAGS =
# UMFPACK_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# UMFPACK_USER_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# UMFPACK_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libumfpack.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libcholmod.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libccolamd.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libcolamd.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libcamd.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libsuitesparseconfig.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libamd.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmetis.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libmpi.dylib;/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libopenblas.dylib;m
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.11
# ZLIB_INCLUDE_DIRS =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/include
# ZLIB_LIBRARIES =
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib/libz.dylib
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )
#
###
[HANDLER_OUTPUT]
Test project
/Users/matthejl/Library/dealii/sources/dealii-9.0.1/build/tests/quick_tests
Start 1: step.debug
1/18 Test #1: step.debug ....................... Passed 44.56 sec
Start 2: step.release
2/18 Test #2: step.release ..................... Passed 34.88 sec
Start 3: affinity.debug
3/18 Test #3: affinity.debug ................... Passed 41.39 sec
Start 4: mpi.debug
4/18 Test #4: mpi.debug ........................ Passed 52.05 sec
Start 5: tbb.debug
5/18 Test #5: tbb.debug ........................ Passed 54.97 sec
Start 6: p4est.debug
6/18 Test #6: p4est.debug ...................... Passed 42.74 sec
Start 7: step-petsc.debug
7/18 Test #7: step-petsc.debug .................***Failed 79.52 sec
/bin/sh: line 1: 4830 Illegal instruction: 4 ./step-petsc.debug >
step-petsc.debug-OK 2>&1
gmake[7]: ***
[tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/step-petsc.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:9438:
tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:9445:
tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:3154: step-petsc.debug.run] Error 2
Test step-petsc.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-step-petsc.debug-OK
[ 0%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_debug
[ 2%] Built target expand_instantiations_exe
[ 8%] Built target obj_numerics_inst
[ 17%] Built target obj_numerics_debug
[ 26%] Built target obj_fe_inst
[ 36%] Built target obj_fe_debug
[ 39%] Built target obj_dofs_inst
[ 41%] Built target obj_dofs_debug
[ 45%] Built target obj_lac_inst
[ 56%] Built target obj_lac_debug
[ 58%] Built target obj_base_inst
[ 71%] Built target obj_base_debug
[ 71%] Built target obj_gmsh_inst
[ 71%] Built target obj_gmsh_debug
[ 76%] Built target obj_grid_inst
[ 80%] Built target obj_grid_debug
[ 82%] Built target obj_hp_inst
[ 82%] Built target obj_hp_debug
[ 84%] Built target obj_multigrid_inst
[ 84%] Built target obj_multigrid_debug
[ 84%] Built target obj_distributed_inst
[ 86%] Built target obj_distributed_debug
[ 89%] Built target obj_algorithms_inst
[ 89%] Built target obj_algorithms_debug
[ 89%] Built target obj_matrix_free_inst
[ 89%] Built target obj_matrix_free_debug
[ 89%] Built target obj_meshworker_inst
[ 89%] Built target obj_meshworker_debug
[ 91%] Built target obj_opencascade_inst
[ 91%] Built target obj_opencascade_debug
[ 93%] Built target obj_particle_inst
[ 93%] Built target obj_particle_debug
[ 93%] Built target obj_differentiation_ad_inst
[ 95%] Built target obj_differentiation_ad_debug
[ 95%] Built target obj_physics_inst
[ 95%] Built target obj_physics_debug
[ 95%] Built target obj_physics_elasticity_inst
[ 97%] Built target obj_physics_elasticity_debug
[100%] Built target obj_non_matching_inst
[100%] Built target obj_non_matching_debug
[100%] Built target deal_II.g
[100%] Built target step-petsc.debug
step-petsc.debug: RUN failed. Output:
step-petsc.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/matthejl/Library/dealii/sources/dealii-9.0.1/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 8: step-metis.debug
8/18 Test #8: step-metis.debug ................. Passed 38.47 sec
Start 9: lapack.debug
9/18 Test #9: lapack.debug .....................***Failed 31.99 sec
/bin/sh: line 1: 5344 Illegal instruction: 4 ./lapack.debug > lapack.debug-OK
2>&1
gmake[7]: *** [tests/quick_tests/CMakeFiles/lapack.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/lapack.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:8596:
tests/quick_tests/CMakeFiles/lapack.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:8603:
tests/quick_tests/CMakeFiles/lapack.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:2816: lapack.debug.run] Error 2
Test lapack.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-lapack.debug-OK
[ 0%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_debug
[ 2%] Built target expand_instantiations_exe
[ 8%] Built target obj_numerics_inst
[ 17%] Built target obj_numerics_debug
[ 26%] Built target obj_fe_inst
[ 36%] Built target obj_fe_debug
[ 39%] Built target obj_dofs_inst
[ 41%] Built target obj_dofs_debug
[ 45%] Built target obj_lac_inst
[ 56%] Built target obj_lac_debug
[ 58%] Built target obj_base_inst
[ 71%] Built target obj_base_debug
[ 71%] Built target obj_gmsh_inst
[ 71%] Built target obj_gmsh_debug
[ 76%] Built target obj_grid_inst
[ 80%] Built target obj_grid_debug
[ 82%] Built target obj_hp_inst
[ 82%] Built target obj_hp_debug
[ 84%] Built target obj_multigrid_inst
[ 84%] Built target obj_multigrid_debug
[ 84%] Built target obj_distributed_inst
[ 86%] Built target obj_distributed_debug
[ 89%] Built target obj_algorithms_inst
[ 89%] Built target obj_algorithms_debug
[ 89%] Built target obj_matrix_free_inst
[ 89%] Built target obj_matrix_free_debug
[ 89%] Built target obj_meshworker_inst
[ 89%] Built target obj_meshworker_debug
[ 91%] Built target obj_opencascade_inst
[ 91%] Built target obj_opencascade_debug
[ 93%] Built target obj_particle_inst
[ 93%] Built target obj_particle_debug
[ 93%] Built target obj_differentiation_ad_inst
[ 95%] Built target obj_differentiation_ad_debug
[ 95%] Built target obj_physics_inst
[ 95%] Built target obj_physics_debug
[ 95%] Built target obj_physics_elasticity_inst
[ 97%] Built target obj_physics_elasticity_debug
[100%] Built target obj_non_matching_inst
[100%] Built target obj_non_matching_debug
[100%] Built target deal_II.g
[100%] Built target lapack.debug
lapack.debug: RUN failed. Output:
lapack.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/matthejl/Library/dealii/sources/dealii-9.0.1/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 10: umfpack.debug
10/18 Test #10: umfpack.debug ....................***Failed 33.41 sec
/bin/sh: line 1: 5594 Illegal instruction: 4 ./umfpack.debug >
umfpack.debug-OK 2>&1
gmake[7]: ***
[tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/umfpack.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:8499:
tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:8506:
tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:2777: umfpack.debug.run] Error 2
Test umfpack.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-umfpack.debug-OK
[ 0%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_debug
[ 2%] Built target expand_instantiations_exe
[ 8%] Built target obj_numerics_inst
[ 17%] Built target obj_numerics_debug
[ 25%] Built target obj_fe_inst
[ 36%] Built target obj_fe_debug
[ 38%] Built target obj_dofs_inst
[ 40%] Built target obj_dofs_debug
[ 44%] Built target obj_lac_inst
[ 55%] Built target obj_lac_debug
[ 57%] Built target obj_base_inst
[ 70%] Built target obj_base_debug
[ 70%] Built target obj_gmsh_inst
[ 70%] Built target obj_gmsh_debug
[ 74%] Built target obj_grid_inst
[ 78%] Built target obj_grid_debug
[ 80%] Built target obj_hp_inst
[ 80%] Built target obj_hp_debug
[ 82%] Built target obj_multigrid_inst
[ 82%] Built target obj_multigrid_debug
[ 82%] Built target obj_distributed_inst
[ 85%] Built target obj_distributed_debug
[ 87%] Built target obj_algorithms_inst
[ 87%] Built target obj_algorithms_debug
[ 87%] Built target obj_matrix_free_inst
[ 87%] Built target obj_matrix_free_debug
[ 87%] Built target obj_meshworker_inst
[ 87%] Built target obj_meshworker_debug
[ 89%] Built target obj_opencascade_inst
[ 89%] Built target obj_opencascade_debug
[ 91%] Built target obj_particle_inst
[ 91%] Built target obj_particle_debug
[ 91%] Built target obj_differentiation_ad_inst
[ 93%] Built target obj_differentiation_ad_debug
[ 93%] Built target obj_physics_inst
[ 93%] Built target obj_physics_debug
[ 93%] Built target obj_physics_elasticity_inst
[ 95%] Built target obj_physics_elasticity_debug
[ 97%] Built target obj_non_matching_inst
[ 97%] Built target obj_non_matching_debug
[ 97%] Built target deal_II.g
[100%] Built target umfpack.debug
umfpack.debug: RUN failed. Output:
umfpack.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/matthejl/Library/dealii/sources/dealii-9.0.1/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 11: gsl.debug
11/18 Test #11: gsl.debug ........................ Passed 31.81 sec
Start 12: nanoflann.debug
12/18 Test #12: nanoflann.debug .................. Passed 31.02 sec
Start 13: arpack.debug
13/18 Test #13: arpack.debug .....................***Failed 30.95 sec
/bin/sh: line 1: 6339 Illegal instruction: 4 ./arpack.debug > arpack.debug-OK
2>&1
gmake[7]: *** [tests/quick_tests/CMakeFiles/arpack.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/arpack.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:8208:
tests/quick_tests/CMakeFiles/arpack.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:8215:
tests/quick_tests/CMakeFiles/arpack.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:2660: arpack.debug.run] Error 2
Test arpack.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-arpack.debug-OK
[ 0%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_debug
[ 2%] Built target expand_instantiations_exe
[ 8%] Built target obj_numerics_inst
[ 17%] Built target obj_numerics_debug
[ 26%] Built target obj_fe_inst
[ 36%] Built target obj_fe_debug
[ 39%] Built target obj_dofs_inst
[ 41%] Built target obj_dofs_debug
[ 45%] Built target obj_lac_inst
[ 56%] Built target obj_lac_debug
[ 58%] Built target obj_base_inst
[ 71%] Built target obj_base_debug
[ 71%] Built target obj_gmsh_inst
[ 71%] Built target obj_gmsh_debug
[ 76%] Built target obj_grid_inst
[ 80%] Built target obj_grid_debug
[ 82%] Built target obj_hp_inst
[ 82%] Built target obj_hp_debug
[ 84%] Built target obj_multigrid_inst
[ 84%] Built target obj_multigrid_debug
[ 84%] Built target obj_distributed_inst
[ 86%] Built target obj_distributed_debug
[ 89%] Built target obj_algorithms_inst
[ 89%] Built target obj_algorithms_debug
[ 89%] Built target obj_matrix_free_inst
[ 89%] Built target obj_matrix_free_debug
[ 89%] Built target obj_meshworker_inst
[ 89%] Built target obj_meshworker_debug
[ 91%] Built target obj_opencascade_inst
[ 91%] Built target obj_opencascade_debug
[ 93%] Built target obj_particle_inst
[ 93%] Built target obj_particle_debug
[ 93%] Built target obj_differentiation_ad_inst
[ 95%] Built target obj_differentiation_ad_debug
[ 95%] Built target obj_physics_inst
[ 95%] Built target obj_physics_debug
[ 95%] Built target obj_physics_elasticity_inst
[ 97%] Built target obj_physics_elasticity_debug
[100%] Built target obj_non_matching_inst
[100%] Built target obj_non_matching_debug
[100%] Built target deal_II.g
[100%] Built target arpack.debug
arpack.debug: RUN failed. Output:
arpack.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/matthejl/Library/dealii/sources/dealii-9.0.1/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 14: adolc.debug
14/18 Test #14: adolc.debug ...................... Passed 31.59 sec
Start 15: sundials-ida.debug
15/18 Test #15: sundials-ida.debug ............... Passed 31.36 sec
Start 16: assimp.debug
16/18 Test #16: assimp.debug ..................... Passed 31.66 sec
Start 17: boost_zlib.debug
17/18 Test #17: boost_zlib.debug ................. Passed 30.19 sec
Start 18: gmsh.debug
18/18 Test #18: gmsh.debug ....................... Passed 30.61 sec
78% tests passed, 4 tests failed out of 18
Total Test time (real) = 703.39 sec
The following tests FAILED:
7 - step-petsc.debug (Failed)
9 - lapack.debug (Failed)
10 - umfpack.debug (Failed)
13 - arpack.debug (Failed)
[ERROR_MESSAGE]
Errors while running CTest
