Hi all,
I am trying installing dealII with CUDA in a GPG machine by following this:
https://www.dealii.org/9.0.0/external-libs/cuda.html
But I get this error in terms of matrix_tools.cc.o. Is this because I don't
turn off Trilinos stuff while cmaking deal.II for successful installation
with CUDA?
/usr/bin/cmake3 \
-DCMAKE_INSTALL_PREFIX=/work1/chueh5851a/software/dealii \
-DP4EST_DIR=/work1/chueh5851a/software/p4est-2.0/FAST \
-DTRILINOS_DIR=/work1/chueh5851a/software/Trilinos \
-D DEAL_II_WITH_MPI:BOOL=ON \
-D DEAL_II_WITH_THREADS:BOOL=ON \
-D DEAL_II_WITH_UMFPACK:BOOL=ON \
-D DEAL_II_WITH_TRILINOS:BOOL=ON \
-D DEAL_II_WITH_CUDA=ON \
-D DEAL_II_WITH_CXX14=OFF \
-D DEAL_II_WITH_PETSC:BOOL=OFF \
-D DEAL_II_WITH_SLEPC:BOOL=OFF \
`pwd`/..
===========make Errors============================================
...
[ 56%] Building CXX object
source/numerics/CMakeFiles/obj_numerics_debug.dir/matrix_tools.cc.o
[ 56%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/matrix_out.cc.o
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(146):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(154):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(169):
error: namespace "Kokkos" has no member "atomic_fetch_or"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(237):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(245):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(260):
error: namespace "Kokkos" has no member "atomic_fetch_or"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(304):
error: namespace "Kokkos" has no member "atomic_fetch_and"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(314):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(338):
error: namespace "Kokkos" has no member "atomic_fetch_or"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_ConcurrentBitset.hpp(348):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_TaskQueue.hpp(226):
error: namespace "Kokkos" has no member "atomic_exchange"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_HostBarrier.hpp(110):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_HostBarrier.hpp(113):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_HostBarrier.hpp(130):
error: namespace "Kokkos" has no member "atomic_fetch_sub"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_HostBarrier.hpp(131):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/impl/Kokkos_HostBarrier.hpp(239):
error: namespace "Kokkos" has no member "atomic_fetch_add"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(93):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(94):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(98):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(102):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(113):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(120):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(112):
error: a class or namespace qualified name is required
detected during instantiation of class
"Kokkos::MemoryPool<DeviceType> [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(112):
error: global-scope qualifier (leading "::") is not allowed
detected during instantiation of class
"Kokkos::MemoryPool<DeviceType> [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(112):
error: expected a ";"
detected during instantiation of class
"Kokkos::MemoryPool<DeviceType> [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(116):
error: identifier "base_memory_space" is undefined
detected during instantiation of class
"Kokkos::MemoryPool<DeviceType> [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_Concepts.hpp(259):
error: static assertion failed with "template arguments must be memory
spaces"
detected during:
instantiation of class
"Kokkos::Impl::MemorySpaceAccess<DstMemorySpace, SrcMemorySpace> [with
DstMemorySpace=Kokkos::HostSpace, SrcMemorySpace=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(116): here
instantiation of class "Kokkos::MemoryPool<DeviceType> [with
DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(120):
error: identifier "base_memory_space" is undefined
detected during instantiation of class
"Kokkos::MemoryPool<DeviceType> [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(346):
error: identifier "base_memory_space" is undefined
detected during instantiation of class
"Kokkos::MemoryPool<DeviceType> [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
error: name followed by "::" must be a class or namespace name
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(128):
error: identifier "CUDA_SAFE_CALL" is undefined
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(132):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(137):
error: namespace "Kokkos" has no member "Cuda"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(139):
error: identifier "CUDA_SAFE_CALL" is undefined
/work1/chueh5851a/CUDA/dealii/bundled/boost-1.62.0/include/boost/smart_ptr/detail/sp_counted_base_gcc_x86.hpp(75):
warning: variable "tmp" was set but never used
/work1/chueh5851a/CUDA/dealii/bundled/boost-1.62.0/include/boost/mpl/print.hpp(64):
warning: integer conversion resulted in a change of sign
/work1/chueh5851a/CUDA/dealii/bundled/boost-1.62.0/include/boost/mpl/set/aux_/item.hpp(47):
warning: "char (&operator||(const boost::mpl::s_item<T, Base> &,
boost::mpl::aux::type_wrapper<T>
*))[boost::mpl::next<Base::order>::type::value]" declares a non-template
function -- add <> to refer to a template instance
/work1/chueh5851a/CUDA/dealii/bundled/boost-1.62.0/include/boost/mpl/set/aux_/item.hpp(48):
warning: "boost::mpl::aux::no_tag operator%(const boost::mpl::s_item<T,
Base> &, boost::mpl::aux::type_wrapper<T> *)" declares a non-template
function -- add <> to refer to a template instance
/work1/chueh5851a/CUDA/dealii/bundled/boost-1.62.0/include/boost/mpl/set/aux_/item.hpp(63):
warning: "boost::mpl::aux::yes_tag operator%(const boost::mpl::s_mask<T,
Base> &, boost::mpl::aux::type_wrapper<T> *)" declares a non-template
function -- add <> to refer to a template instance
/work1/chueh5851a/CUDA/dealii/bundled/boost-1.62.0/include/boost/mpl/set/aux_/item.hpp(77):
warning: "boost::mpl::aux::no_tag operator%(const boost::mpl::s_unmask<T,
Base> &, boost::mpl::aux::type_wrapper<T> *)" declares a non-template
function -- add <> to refer to a template instance
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(486):
error: class "Kokkos::Impl::SharedAllocationRecord<<error-type>, void>" has
no member "allocate"
detected during instantiation of
"Kokkos::MemoryPool<DeviceType>::MemoryPool(const
Kokkos::MemoryPool<DeviceType>::base_memory_space &, size_t, size_t,
size_t, size_t) [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(526):
error: identifier "base_memory_space" is undefined
detected during instantiation of
"Kokkos::MemoryPool<DeviceType>::MemoryPool(const
Kokkos::MemoryPool<DeviceType>::base_memory_space &, size_t, size_t,
size_t, size_t) [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_Core_fwd.hpp(242):
error: a class or namespace qualified name is required
detected during:
processing of template argument list for
"Kokkos::Impl::DeepCopy" based on template arguments <<error-type>,
Kokkos::HostSpace>
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(526): here
instantiation of
"Kokkos::MemoryPool<DeviceType>::MemoryPool(const
Kokkos::MemoryPool<DeviceType>::base_memory_space &, size_t, size_t,
size_t, size_t) [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_Core_fwd.hpp(242):
error: expected a ","
detected during:
processing of template argument list for
"Kokkos::Impl::DeepCopy" based on template arguments <<error-type>,
Kokkos::HostSpace>
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(526): here
instantiation of
"Kokkos::MemoryPool<DeviceType>::MemoryPool(const
Kokkos::MemoryPool<DeviceType>::base_memory_space &, size_t, size_t,
size_t, size_t) [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
/work1/chueh5851a/software/Trilinos/include/Kokkos_MemoryPool.hpp(526):
error: incomplete type is not allowed
detected during instantiation of
"Kokkos::MemoryPool<DeviceType>::MemoryPool(const
Kokkos::MemoryPool<DeviceType>::base_memory_space &, size_t, size_t,
size_t, size_t) [with DeviceType=<error-type>]"
/work1/chueh5851a/software/Trilinos/include/Sacado_DynamicArrayTraits.hpp(122):
here
39 errors detected in the compilation of
"/tmp/tmpxft_000389ff_00000000-6_cuda_matrix_free.cpp1.ii".
make[2]: ***
[source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/cuda_matrix_free.cu.o]
Error 1
make[2]: *** Waiting for unfinished jobs....
Sincerely,
Chih-Che
--
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