Hi all,
I'm having trouble installing deal.II. cmake seems to find gsl just fine,
but it looks like there is trouble when linking against it. As you can see
in the quicktests.log, the error it gives is that "symbol lookup error:
/lib64/libgsl.so.23: undefined symbol: cblas_ctrmv"
I also see that a similar issue had bee reported here
https://github.com/dealii/dealii/issues/2757, but this was a couple years
ago and a patch was merged.
The logs you see are for installing the master branch from github, although
I got similar errors when trying to install version 8.5 as well.
-Kyle Williams
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/kylew/local/deal.II
# CMAKE_SOURCE_DIR: /home/kylew/servers/storage/deal.II
# (version 9.1.0-pre, shortrev a998e81498)
# CMAKE_BINARY_DIR: /home/kylew/servers/storage/deal.II-build
# CMAKE_CXX_COMPILER: GNU 8.2.1 on platform Linux x86_64
# /usr/bin/c++
# CMAKE_C_COMPILER: /usr/bin/cc
# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fPIC -Wall -Wextra
-Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wsuggest-override -Wswitch
-Wsynth -Wwrite-strings -Wno-placement-new -Wno-deprecated-declarations
-Wno-literal-suffix -Wno-psabi -Wno-class-memaccess -fopenmp-simd -std=c++17
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing -Wno-unused-local-typedefs
# DEAL_II_CXX_FLAGS_DEBUG: -O0 -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES:
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
# DEAL_II_COMPILER_VECTORIZATION_LEVEL: 1
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ADOLC = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# ( DEAL_II_WITH_ASSIMP = OFF )
# DEAL_II_WITH_BOOST set up with external dependencies
# BOOST_VERSION = 1.66.0
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_USER_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_INCLUDE_DIRS = /usr/include
# BOOST_USER_INCLUDE_DIRS = /usr/include
# BOOST_LIBRARIES =
/usr/lib64/libboost_iostreams.so;/usr/lib64/libboost_serialization.so;/usr/lib64/libboost_system.so;/usr/lib64/libboost_thread.so;/usr/lib64/libboost_regex.so;/usr/lib64/libboost_chrono.so;/usr/lib64/libboost_date_time.so;/usr/lib64/libboost_atomic.so
# DEAL_II_WITH_COMPLEX_VALUES = ON
# ( DEAL_II_WITH_CUDA = OFF )
# DEAL_II_WITH_CXX14 = ON
# DEAL_II_WITH_CXX17 = ON
# ( DEAL_II_WITH_GMSH = OFF )
# DEAL_II_WITH_GSL set up with external dependencies
# GSL_VERSION = 2.4
# GSL_INCLUDE_DIRS = /usr/include
# GSL_USER_INCLUDE_DIRS = /usr/include
# GSL_LIBRARIES = /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_WITH_64BIT_BLAS_INDICES = OFF
# LAPACK_LINKER_FLAGS =
# LAPACK_LIBRARIES =
/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 3.1
# MPI_C_COMPILER = /usr/lib64/openmpi/bin/mpicc
# MPI_CXX_COMPILER = /usr/lib64/openmpi/bin/mpicxx
# MPI_Fortran_COMPILER = /usr/lib64/openmpi/bin/mpif90
# MPI_CXX_FLAGS = -pthread
# MPI_LINKER_FLAGS = -Wl,-rpath -Wl,/usr/lib64/openmpi/lib
-Wl,--enable-new-dtags -pthread
# MPI_INCLUDE_DIRS = /usr/include/openmpi-x86_64
# MPI_USER_INCLUDE_DIRS = /usr/include/openmpi-x86_64
# MPI_LIBRARIES =
/usr/lib64/openmpi/lib/libmpi_cxx.so;/usr/lib64/openmpi/lib/libmpi_usempif08.so;/usr/lib64/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib64/openmpi/lib/libmpi_mpifh.so;/usr/lib64/openmpi/lib/libmpi.so
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/home/kylew/servers/storage/deal.II/bundled/muparser_v2_2_4//include
# ( DEAL_II_WITH_NANOFLANN = OFF )
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# P4EST_VERSION = 2.0
# P4EST_DIR = /home/kylew/local/p4est
# P4EST_INCLUDE_DIRS = /home/kylew/local/p4est/FAST/include
# P4EST_USER_INCLUDE_DIRS = /home/kylew/local/p4est/FAST/include
# P4EST_LIBRARIES =
optimized;/home/kylew/local/p4est/FAST/lib/libp4est.so;/home/kylew/local/p4est/FAST/lib/libsc.so;debug;/home/kylew/local/p4est/DEBUG/lib/libp4est.so;/home/kylew/local/p4est/DEBUG/lib/libsc.so;general;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;/usr/lib64/openmpi/lib/libmpi.so
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SCALAPACK = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# ( DEAL_II_WITH_SUNDIALS = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_LINKER_FLAGS = -pthread
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/home/kylew/servers/storage/deal.II/bundled/tbb-2018_U2/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with bundled packages
# UMFPACK_BUNDLED_INCLUDE_DIRS =
/home/kylew/servers/storage/deal.II/bundled/umfpack/UMFPACK/Include;/home/kylew/servers/storage/deal.II/bundled/umfpack/AMD/Include
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.11
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib64/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )
#
###
rm -rf $HOME/local/deal.II/*
cmake \
-D CMAKE_INSTALL_PREFIX=$HOME/local/deal.II \
-D DEAL_II_WITH_MPI=ON \
-D DEAL_II_WITH_P4EST=ON \
-D P4EST_DIR=$HOME/local/p4est \
../deal.II
make -j4 install
make -j4 test
[HANDLER_OUTPUT]
Test project /home/kylew/servers/storage/deal.II-build/tests/quick_tests
Start 1: step.debug
Start 2: step.release
Start 3: affinity.debug
Start 4: mpi.debug
1/10 Test #3: affinity.debug ...................***Failed 16.19 sec
gmake[7]: ***
[tests/quick_tests/CMakeFiles/affinity.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/affinity.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13341:
tests/quick_tests/CMakeFiles/affinity.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13348:
tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4506: affinity.debug.run] Error 2
Test affinity.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-affinity.debug-OK
[ 0%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_debug
[ 11%] Built target obj_tbb_debug
[ 11%] Built target obj_umfpack_GENERIC_debug
[ 11%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 15%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 22%] Built target obj_umfpack_L_UMFPACK_debug
[ 22%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 27%] Built target obj_umfpack_DI_TSOLVE_debug
[ 34%] Built target obj_umfpack_I_UMF_debug
[ 34%] Built target obj_umfpack_DI_STORE_debug
[ 47%] Built target obj_umfpack_L_UMF_debug
[ 47%] Built target obj_umfpack_DI_SOLVE_debug
[ 47%] Built target obj_umfpack_DL_TSOLVE_debug
[ 56%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 61%] Built target obj_umfpack_I_UMFPACK_debug
[ 61%] Built target obj_umfpack_DL_STORE_debug
[ 61%] Built target obj_umfpack_DL_SOLVE_debug
[ 61%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 61%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 63%] Built target obj_amd_int_debug
[ 65%] Built target obj_amd_long_debug
[ 65%] Built target obj_amd_global_debug
[ 70%] Built target obj_muparser_debug
[ 70%] Built target expand_instantiations_exe
[ 75%] Built target obj_numerics_inst
[ 79%] Built target obj_numerics_debug
[ 93%] Built target obj_fe_inst
[111%] Built target obj_fe_debug
[111%] Built target obj_dofs_inst
[115%] Built target obj_dofs_debug
[118%] Built target obj_lac_inst
[129%] Built target obj_lac_debug
[129%] Built target obj_base_inst
[152%] Built target obj_base_debug
[152%] Built target obj_gmsh_inst
[152%] Built target obj_gmsh_debug
[154%] Built target obj_grid_inst
[159%] Built target obj_grid_debug
[161%] Built target obj_hp_inst
[161%] Built target obj_hp_debug
[163%] Built target obj_multigrid_inst
[163%] Built target obj_multigrid_debug
[163%] Built target obj_distributed_inst
[168%] Built target obj_distributed_debug
[168%] Built target obj_algorithms_inst
[168%] Built target obj_algorithms_debug
[168%] Built target obj_matrix_free_inst
[170%] Built target obj_matrix_free_debug
[170%] Built target obj_meshworker_inst
[170%] Built target obj_meshworker_debug
[172%] Built target obj_opencascade_inst
[172%] Built target obj_opencascade_debug
[175%] Built target obj_particle_inst
[175%] Built target obj_particle_debug
[177%] Built target obj_differentiation_ad_inst
[177%] Built target obj_differentiation_ad_debug
[177%] Built target obj_physics_inst
[177%] Built target obj_physics_debug
[177%] Built target obj_physics_elasticity_inst
[177%] Built target obj_physics_elasticity_debug
[177%] Built target obj_non_matching_inst
[179%] Built target obj_non_matching_debug
[179%] Built target deal_II.g
Scanning dependencies of target affinity.debug
[179%] Building CXX object
tests/quick_tests/CMakeFiles/affinity.debug.dir/affinity.cc.o
[179%] Linking CXX executable affinity.debug
[179%] Built target affinity.debug
Scanning dependencies of target affinity.debug.run
affinity.debug: RUN failed. Output:
./affinity.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
affinity.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 5: tbb.debug
2/10 Test #4: mpi.debug ........................***Failed 17.27 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/mpi.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/mpi.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13309:
tests/quick_tests/CMakeFiles/mpi.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13316:
tests/quick_tests/CMakeFiles/mpi.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4493: mpi.debug.run] Error 2
Test mpi.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-mpi.debug-OK
[ 0%] Built target obj_sundials_inst
[ 0%] Built target obj_sundials_debug
[ 11%] Built target obj_tbb_debug
[ 11%] Built target obj_umfpack_GENERIC_debug
[ 11%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 15%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 22%] Built target obj_umfpack_L_UMFPACK_debug
[ 22%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 27%] Built target obj_umfpack_DI_TSOLVE_debug
[ 34%] Built target obj_umfpack_I_UMF_debug
[ 34%] Built target obj_umfpack_DI_STORE_debug
[ 47%] Built target obj_umfpack_L_UMF_debug
[ 47%] Built target obj_umfpack_DI_SOLVE_debug
[ 47%] Built target obj_umfpack_DL_TSOLVE_debug
[ 56%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 61%] Built target obj_umfpack_I_UMFPACK_debug
[ 61%] Built target obj_umfpack_DL_STORE_debug
[ 61%] Built target obj_umfpack_DL_SOLVE_debug
[ 61%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 61%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 63%] Built target obj_amd_int_debug
[ 65%] Built target obj_amd_long_debug
[ 65%] Built target obj_amd_global_debug
[ 70%] Built target obj_muparser_debug
[ 70%] Built target expand_instantiations_exe
[ 75%] Built target obj_numerics_inst
[ 79%] Built target obj_numerics_debug
[ 93%] Built target obj_fe_inst
[111%] Built target obj_fe_debug
[111%] Built target obj_dofs_inst
[115%] Built target obj_dofs_debug
[118%] Built target obj_lac_inst
[129%] Built target obj_lac_debug
[129%] Built target obj_base_inst
[152%] Built target obj_base_debug
[152%] Built target obj_gmsh_inst
[152%] Built target obj_gmsh_debug
[154%] Built target obj_grid_inst
[159%] Built target obj_grid_debug
[161%] Built target obj_hp_inst
[161%] Built target obj_hp_debug
[163%] Built target obj_multigrid_inst
[163%] Built target obj_multigrid_debug
[163%] Built target obj_distributed_inst
[168%] Built target obj_distributed_debug
[168%] Built target obj_algorithms_inst
[168%] Built target obj_algorithms_debug
[168%] Built target obj_matrix_free_inst
[170%] Built target obj_matrix_free_debug
[170%] Built target obj_meshworker_inst
[170%] Built target obj_meshworker_debug
[172%] Built target obj_opencascade_inst
[175%] Built target obj_opencascade_debug
[175%] Built target obj_particle_inst
[175%] Built target obj_particle_debug
[177%] Built target obj_differentiation_ad_inst
[177%] Built target obj_differentiation_ad_debug
[177%] Built target obj_physics_inst
[177%] Built target obj_physics_debug
[177%] Built target obj_physics_elasticity_inst
[177%] Built target obj_physics_elasticity_debug
[177%] Built target obj_non_matching_inst
[179%] Built target obj_non_matching_debug
[179%] Built target deal_II.g
Scanning dependencies of target mpi.debug
[179%] Building CXX object tests/quick_tests/CMakeFiles/mpi.debug.dir/mpi.cc.o
[179%] Linking CXX executable mpi.debug
[179%] Built target mpi.debug
Scanning dependencies of target mpi.debug.run
mpi.debug: RUN failed. Output:
./mpi.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
./mpi.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus
causing
the job to be terminated. The first process to do so was:
Process name: [[19602,1],0]
Exit code: 127
--------------------------------------------------------------------------
mpi.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 6: p4est.debug
3/10 Test #2: step.release .....................***Failed 22.61 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/step.release.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13600:
tests/quick_tests/CMakeFiles/step.release.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13607:
tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4610: step.release.run] Error 2
Test step.release: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-step.release-OK
[ 0%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_release
[ 11%] Built target obj_tbb_release
[ 11%] Built target obj_umfpack_GENERIC_release
[ 11%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_release
[ 15%] Built target obj_umfpack_I_UMFPACK_release
[ 18%] Built target obj_umfpack_DI_TRIPLET_MAP_X_release
[ 27%] Built target obj_umfpack_L_UMFPACK_release
[ 27%] Built target obj_umfpack_DL_TSOLVE_release
[ 27%] Built target obj_umfpack_DL_ASSEMBLE_release
[ 27%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_release
[ 34%] Built target obj_umfpack_DI_TSOLVE_release
[ 47%] Built target obj_umfpack_I_UMF_release
[ 54%] Built target obj_umfpack_L_UMF_release
[ 56%] Built target obj_umfpack_DI_STORE_release
[ 61%] Built target obj_umfpack_DI_ASSEMBLE_release
[ 61%] Built target obj_umfpack_DL_STORE_release
[ 61%] Built target obj_umfpack_DI_SOLVE_release
[ 61%] Built target obj_umfpack_DL_TRIPLET_MAP_X_release
[ 61%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_release
[ 63%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_release
[ 65%] Built target obj_umfpack_DL_SOLVE_release
[ 68%] Built target obj_amd_int_release
[ 70%] Built target obj_amd_long_release
[ 70%] Built target obj_amd_global_release
[ 70%] Built target obj_muparser_release
[ 70%] Built target expand_instantiations_exe
[ 75%] Built target obj_numerics_inst
[ 86%] Built target obj_numerics_release
[ 93%] Built target obj_fe_inst
[111%] Built target obj_fe_release
[111%] Built target obj_dofs_inst
[115%] Built target obj_dofs_release
[118%] Built target obj_lac_inst
[129%] Built target obj_lac_release
[129%] Built target obj_base_inst
[152%] Built target obj_base_release
[152%] Built target obj_gmsh_inst
[152%] Built target obj_gmsh_release
[154%] Built target obj_grid_inst
[159%] Built target obj_grid_release
[161%] Built target obj_hp_inst
[161%] Built target obj_hp_release
[163%] Built target obj_multigrid_inst
[163%] Built target obj_multigrid_release
[163%] Built target obj_distributed_inst
[168%] Built target obj_distributed_release
[168%] Built target obj_algorithms_inst
[168%] Built target obj_algorithms_release
[168%] Built target obj_matrix_free_inst
[170%] Built target obj_matrix_free_release
[170%] Built target obj_meshworker_inst
[172%] Built target obj_meshworker_release
[172%] Built target obj_opencascade_inst
[175%] Built target obj_opencascade_release
[175%] Built target obj_particle_inst
[177%] Built target obj_particle_release
[177%] Built target obj_differentiation_ad_inst
[177%] Built target obj_differentiation_ad_release
[177%] Built target obj_physics_inst
[177%] Built target obj_physics_release
[177%] Built target obj_physics_elasticity_inst
[177%] Built target obj_physics_elasticity_release
[177%] Built target obj_non_matching_inst
[179%] Built target obj_non_matching_release
[179%] Built target deal_II
Scanning dependencies of target step.release
[179%] Building CXX object
tests/quick_tests/CMakeFiles/step.release.dir/step.cc.o
[ 97%] Linking CXX executable step.release
[100%] Built target step.release
Scanning dependencies of target step.release.run
step.release: RUN failed. Output:
./step.release: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
step.release: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 7: lapack.debug
4/10 Test #1: step.debug .......................***Failed 24.89 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/step.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13761:
tests/quick_tests/CMakeFiles/step.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13768:
tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4675: step.debug.run] Error 2
Test step.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-step.debug-OK
[ 0%] Built target obj_sundials_inst
[ 0%] Built target obj_sundials_debug
[ 11%] Built target obj_tbb_debug
[ 11%] Built target obj_umfpack_GENERIC_debug
[ 11%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 15%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 22%] Built target obj_umfpack_L_UMFPACK_debug
[ 22%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 27%] Built target obj_umfpack_DI_TSOLVE_debug
[ 34%] Built target obj_umfpack_I_UMF_debug
[ 34%] Built target obj_umfpack_DI_STORE_debug
[ 47%] Built target obj_umfpack_L_UMF_debug
[ 47%] Built target obj_umfpack_DI_SOLVE_debug
[ 47%] Built target obj_umfpack_DL_TSOLVE_debug
[ 56%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 61%] Built target obj_umfpack_I_UMFPACK_debug
[ 61%] Built target obj_umfpack_DL_STORE_debug
[ 61%] Built target obj_umfpack_DL_SOLVE_debug
[ 61%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 61%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 63%] Built target obj_amd_int_debug
[ 65%] Built target obj_amd_long_debug
[ 65%] Built target obj_amd_global_debug
[ 70%] Built target obj_muparser_debug
[ 70%] Built target expand_instantiations_exe
[ 75%] Built target obj_numerics_inst
[ 86%] Built target obj_numerics_debug
[ 93%] Built target obj_fe_inst
[111%] Built target obj_fe_debug
[111%] Built target obj_dofs_inst
[115%] Built target obj_dofs_debug
[118%] Built target obj_lac_inst
[129%] Built target obj_lac_debug
[129%] Built target obj_base_inst
[152%] Built target obj_base_debug
[152%] Built target obj_gmsh_inst
[152%] Built target obj_gmsh_debug
[154%] Built target obj_grid_inst
[159%] Built target obj_grid_debug
[161%] Built target obj_hp_inst
[161%] Built target obj_hp_debug
[163%] Built target obj_multigrid_inst
[163%] Built target obj_multigrid_debug
[163%] Built target obj_distributed_inst
[168%] Built target obj_distributed_debug
[168%] Built target obj_algorithms_inst
[168%] Built target obj_algorithms_debug
[168%] Built target obj_matrix_free_inst
[170%] Built target obj_matrix_free_debug
[170%] Built target obj_meshworker_inst
[170%] Built target obj_meshworker_debug
[172%] Built target obj_opencascade_inst
[172%] Built target obj_opencascade_debug
[175%] Built target obj_particle_inst
[175%] Built target obj_particle_debug
[177%] Built target obj_differentiation_ad_inst
[177%] Built target obj_differentiation_ad_debug
[177%] Built target obj_physics_inst
[177%] Built target obj_physics_debug
[177%] Built target obj_physics_elasticity_inst
[177%] Built target obj_physics_elasticity_debug
[177%] Built target obj_non_matching_inst
[179%] Built target obj_non_matching_debug
[179%] Built target deal_II.g
Scanning dependencies of target step.debug
[179%] Building CXX object tests/quick_tests/CMakeFiles/step.debug.dir/step.cc.o
[ 97%] Linking CXX executable step.debug
[ 4%] Built target step.debug
Scanning dependencies of target step.debug.run
step.debug: RUN failed. Output:
./step.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
step.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 8: umfpack.debug
5/10 Test #5: tbb.debug ........................***Failed 12.87 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/tbb.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13406:
tests/quick_tests/CMakeFiles/tbb.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13413:
tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4532: tbb.debug.run] Error 2
Test tbb.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-tbb.debug-OK
[ 0%] Built target obj_sundials_inst
[ 0%] Built target obj_sundials_debug
[ 4%] Built target obj_tbb_debug
[ 4%] Built target obj_umfpack_GENERIC_debug
[ 4%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 9%] Built target obj_umfpack_L_UMFPACK_debug
[ 9%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 9%] Built target obj_umfpack_DI_TSOLVE_debug
[ 15%] Built target obj_umfpack_I_UMF_debug
[ 15%] Built target obj_umfpack_DI_STORE_debug
[ 6%] Built target obj_umfpack_L_UMF_debug
[ 6%] Built target obj_umfpack_DI_SOLVE_debug
[ 6%] Built target obj_umfpack_DL_TSOLVE_debug
[ 9%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 18%] Built target obj_umfpack_I_UMFPACK_debug
[ 18%] Built target obj_umfpack_DL_STORE_debug
[ 18%] Built target obj_umfpack_DL_SOLVE_debug
[ 18%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 18%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 25%] Built target obj_amd_int_debug
[ 27%] Built target obj_amd_long_debug
[ 27%] Built target obj_amd_global_debug
[ 29%] Built target obj_muparser_debug
[ 36%] Built target expand_instantiations_exe
[ 40%] Built target obj_numerics_inst
[ 45%] Built target obj_numerics_debug
[ 52%] Built target obj_fe_inst
[ 61%] Built target obj_fe_debug
[ 61%] Built target obj_dofs_inst
[ 63%] Built target obj_dofs_debug
[ 65%] Built target obj_lac_inst
[ 72%] Built target obj_lac_debug
[ 72%] Built target obj_base_inst
[ 84%] Built target obj_base_debug
[ 84%] Built target obj_gmsh_inst
[ 84%] Built target obj_gmsh_debug
[ 86%] Built target obj_grid_inst
[ 88%] Built target obj_grid_debug
[ 90%] Built target obj_hp_inst
[ 90%] Built target obj_hp_debug
[ 93%] Built target obj_multigrid_inst
[ 93%] Built target obj_multigrid_debug
[ 93%] Built target obj_distributed_inst
[ 95%] Built target obj_distributed_debug
[ 95%] Built target obj_algorithms_inst
[ 95%] Built target obj_algorithms_debug
[ 95%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_debug
[ 97%] Built target obj_meshworker_inst
[ 97%] Built target obj_meshworker_debug
[ 97%] Built target obj_opencascade_inst
[ 97%] Built target obj_opencascade_debug
[ 97%] Built target obj_particle_inst
[ 97%] Built target obj_particle_debug
[ 97%] Built target obj_differentiation_ad_inst
[ 97%] Built target obj_differentiation_ad_debug
[ 97%] Built target obj_physics_inst
[ 97%] Built target obj_physics_debug
[ 97%] Built target obj_physics_elasticity_inst
[ 97%] Built target obj_physics_elasticity_debug
[ 97%] Built target obj_non_matching_inst
[100%] Built target obj_non_matching_debug
[100%] Built target deal_II.g
Scanning dependencies of target tbb.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/tbb.debug.dir/tbb.cc.o
[ 82%] Linking CXX executable tbb.debug
[ 95%] Built target tbb.debug
Scanning dependencies of target tbb.debug.run
tbb.debug: RUN failed. Output:
./tbb.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
tbb.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 9: gsl.debug
6/10 Test #7: lapack.debug .....................***Failed 12.58 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/lapack.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/lapack.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13826:
tests/quick_tests/CMakeFiles/lapack.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13833:
tests/quick_tests/CMakeFiles/lapack.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4701: lapack.debug.run] Error 2
Test lapack.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-lapack.debug-OK
[ 0%] Built target obj_sundials_inst
[ 0%] Built target obj_sundials_debug
[ 4%] Built target obj_tbb_debug
[ 4%] Built target obj_umfpack_GENERIC_debug
[ 4%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 8%] Built target obj_umfpack_L_UMFPACK_debug
Built target obj_umfpack_DI_ASSEMBLE_debug
[ 0%] Built target obj_umfpack_DI_TSOLVE_debug
[ 6%] Built target obj_umfpack_I_UMF_debug
[ 6%] Built target obj_umfpack_DI_STORE_debug
[ 13%] Built target obj_umfpack_L_UMF_debug
[ 17%] Built target obj_umfpack_DI_SOLVE_debug
[ 17%] Built target obj_umfpack_DL_TSOLVE_debug
[ 20%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 24%] Built target obj_umfpack_I_UMFPACK_debug
[ 24%] Built target obj_umfpack_DL_STORE_debug
[ 24%] Built target obj_umfpack_DL_SOLVE_debug
[ 28%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 28%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 31%] Built target obj_amd_int_debug
[ 33%] Built target obj_amd_long_debug
[ 33%] Built target obj_amd_global_debug
[ 35%] Built target obj_muparser_debug
[ 35%] Built target expand_instantiations_exe
[ 40%] Built target obj_numerics_inst
[ 44%] Built target obj_numerics_debug
[ 51%] Built target obj_fe_inst
[ 60%] Built target obj_fe_debug
[ 60%] Built target obj_dofs_inst
[ 62%] Built target obj_dofs_debug
[ 64%] Built target obj_lac_inst
[ 71%] Built target obj_lac_debug
[ 71%] Built target obj_base_inst
[ 82%] Built target obj_base_debug
[ 82%] Built target obj_gmsh_inst
[ 82%] Built target obj_gmsh_debug
[ 84%] Built target obj_grid_inst
[ 86%] Built target obj_grid_debug
[ 88%] Built target obj_hp_inst
[ 88%] Built target obj_hp_debug
[ 91%] Built target obj_multigrid_inst
[ 91%] Built target obj_multigrid_debug
[ 91%] Built target obj_distributed_inst
[ 93%] Built target obj_distributed_debug
[ 93%] Built target obj_algorithms_inst
[ 93%] Built target obj_algorithms_debug
[ 93%] Built target obj_matrix_free_inst
[ 95%] Built target obj_matrix_free_debug
[ 95%] Built target obj_meshworker_inst
[ 95%] Built target obj_meshworker_debug
[ 95%] Built target obj_opencascade_inst
[ 95%] Built target obj_opencascade_debug
[ 95%] Built target obj_particle_inst
[ 95%] Built target obj_particle_debug
[ 95%] Built target obj_differentiation_ad_inst
[ 95%] Built target obj_differentiation_ad_debug
[ 95%] Built target obj_physics_inst
[ 95%] Built target obj_physics_debug
[ 95%] Built target obj_physics_elasticity_inst
[ 95%] Built target obj_physics_elasticity_debug
Built target obj_non_matching_inst
[ 2%] Built target obj_non_matching_debug
[ 6%] Built target deal_II.g
Scanning dependencies of target lapack.debug
[ 9%] Building CXX object
tests/quick_tests/CMakeFiles/lapack.debug.dir/lapack.cc.o
[102%] Linking CXX executable lapack.debug
[102%] Built target lapack.debug
Scanning dependencies of target lapack.debug.run
lapack.debug: RUN failed. Output:
./lapack.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
lapack.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 10: boost_zlib.debug
7/10 Test #6: p4est.debug ......................***Failed 19.26 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/p4est.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/p4est.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13665:
tests/quick_tests/CMakeFiles/p4est.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13672:
tests/quick_tests/CMakeFiles/p4est.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4636: p4est.debug.run] Error 2
Test p4est.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 6%] Built target kill-p4est.debug-OK
[ 6%] Built target obj_sundials_inst
[ 6%] Built target obj_sundials_debug
[ 13%] Built target obj_tbb_debug
[ 18%] Built target obj_umfpack_GENERIC_debug
[ 18%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 18%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 18%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 18%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 22%] Built target obj_umfpack_L_UMFPACK_debug
[ 25%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 27%] Built target obj_umfpack_DI_TSOLVE_debug
[ 36%] Built target obj_umfpack_I_UMF_debug
[ 36%] Built target obj_umfpack_DI_STORE_debug
[ 40%] Built target obj_umfpack_L_UMF_debug
[ 40%] Built target obj_umfpack_DI_SOLVE_debug
[ 40%] Built target obj_umfpack_DL_TSOLVE_debug
[ 40%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 45%] Built target obj_umfpack_I_UMFPACK_debug
[ 52%] Built target obj_umfpack_DL_STORE_debug
[ 52%] Built target obj_umfpack_DL_SOLVE_debug
[ 52%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 52%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 52%] Built target obj_amd_int_debug
[ 61%] Built target obj_amd_long_debug
[ 61%] Built target obj_amd_global_debug
[ 61%] Built target obj_muparser_debug
[ 61%] Built target expand_instantiations_exe
[ 63%] Built target obj_numerics_inst
[ 72%] Built target obj_numerics_debug
[ 72%] Built target obj_fe_inst
[ 86%] Built target obj_fe_debug
[ 86%] Built target obj_dofs_inst
[ 90%] Built target obj_dofs_debug
[ 90%] Built target obj_lac_inst
[ 93%] Built target obj_lac_debug
[ 93%] Built target obj_base_inst
[ 95%] Built target obj_base_debug
[ 95%] Built target obj_gmsh_inst
[ 95%] Built target obj_gmsh_debug
[ 95%] Built target obj_grid_inst
[ 97%] Built target obj_grid_debug
[ 97%] Built target obj_hp_inst
[ 97%] Built target obj_hp_debug
[ 97%] Built target obj_multigrid_inst
[ 97%] Built target obj_multigrid_debug
[ 97%] Built target obj_distributed_inst
[ 97%] Built target obj_distributed_debug
[ 97%] Built target obj_algorithms_inst
[ 97%] Built target obj_algorithms_debug
[ 97%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_debug
[ 97%] Built target obj_meshworker_inst
[100%] Built target obj_meshworker_debug
[100%] Built target obj_opencascade_inst
[100%] Built target obj_opencascade_debug
[100%] Built target obj_particle_inst
[100%] Built target obj_particle_debug
[100%] Built target obj_differentiation_ad_inst
[100%] Built target obj_differentiation_ad_debug
[100%] Built target obj_physics_inst
[100%] Built target obj_physics_debug
[100%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_debug
[100%] Built target obj_non_matching_inst
Built target obj_non_matching_debug
[ 0%] Built target deal_II.g
Scanning dependencies of target p4est.debug
[ 0%] Building CXX object
tests/quick_tests/CMakeFiles/p4est.debug.dir/p4est.cc.o
[102%] Linking CXX executable p4est.debug
[102%] Built target p4est.debug
Scanning dependencies of target p4est.debug.run
p4est.debug: RUN failed. Output:
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
./p4est.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus
causing
the job to be terminated. The first process to do so was:
Process name: [[29370,1],0]
Exit code: 127
--------------------------------------------------------------------------
p4est.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
8/10 Test #9: gsl.debug ........................***Failed 9.92 sec
gmake[7]: *** [tests/quick_tests/CMakeFiles/gsl.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/gsl.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:14214:
tests/quick_tests/CMakeFiles/gsl.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:14221:
tests/quick_tests/CMakeFiles/gsl.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4857: gsl.debug.run] Error 2
Test gsl.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 2%] Built target kill-gsl.debug-OK
[ 2%] Built target obj_sundials_inst
[ 2%] Built target obj_sundials_debug
[ 6%] Built target obj_tbb_debug
[ 6%] Built target obj_umfpack_GENERIC_debug
[ 6%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 6%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 6%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 9%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 13%] Built target obj_umfpack_L_UMFPACK_debug
[ 13%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 13%] Built target obj_umfpack_DI_TSOLVE_debug
[ 20%] Built target obj_umfpack_I_UMF_debug
[ 20%] Built target obj_umfpack_DI_STORE_debug
[ 27%] Built target obj_umfpack_L_UMF_debug
[ 27%] Built target obj_umfpack_DI_SOLVE_debug
[ 27%] Built target obj_umfpack_DL_TSOLVE_debug
[ 29%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 34%] Built target obj_umfpack_I_UMFPACK_debug
[ 34%] Built target obj_umfpack_DL_STORE_debug
[ 34%] Built target obj_umfpack_DL_SOLVE_debug
[ 34%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 34%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 36%] Built target obj_amd_int_debug
[ 38%] Built target obj_amd_long_debug
[ 38%] Built target obj_amd_global_debug
[ 40%] Built target obj_muparser_debug
[ 40%] Built target expand_instantiations_exe
[ 45%] Built target obj_numerics_inst
[ 50%] Built target obj_numerics_debug
[ 56%] Built target obj_fe_inst
[ 65%] Built target obj_fe_debug
[ 65%] Built target obj_dofs_inst
[ 68%] Built target obj_dofs_debug
[ 70%] Built target obj_lac_inst
[ 77%] Built target obj_lac_debug
[ 77%] Built target obj_base_inst
[ 88%] Built target obj_base_debug
[ 88%] Built target obj_gmsh_inst
[ 88%] Built target obj_gmsh_debug
[ 90%] Built target obj_grid_inst
[ 93%] Built target obj_grid_debug
[ 95%] Built target obj_hp_inst
[ 95%] Built target obj_hp_debug
[ 97%] Built target obj_multigrid_inst
[ 97%] Built target obj_multigrid_debug
[ 97%] Built target obj_distributed_inst
[100%] Built target obj_distributed_debug
[100%] Built target obj_algorithms_inst
[100%] Built target obj_algorithms_debug
[100%] Built target obj_matrix_free_inst
[102%] Built target obj_matrix_free_debug
[102%] Built target obj_meshworker_inst
[102%] Built target obj_meshworker_debug
[102%] Built target obj_opencascade_inst
[102%] Built target obj_opencascade_debug
[102%] Built target obj_particle_inst
[102%] Built target obj_particle_debug
[102%] Built target obj_differentiation_ad_inst
[102%] Built target obj_differentiation_ad_debug
[102%] Built target obj_physics_inst
[102%] Built target obj_physics_debug
[102%] Built target obj_physics_elasticity_inst
[102%] Built target obj_physics_elasticity_debug
[102%] Built target obj_non_matching_inst
[102%] Built target obj_non_matching_debug
[102%] Built target deal_II.g
Scanning dependencies of target gsl.debug
[102%] Building CXX object tests/quick_tests/CMakeFiles/gsl.debug.dir/gsl.cc.o
[ 52%] Linking CXX executable gsl.debug
[ 88%] Built target gsl.debug
Scanning dependencies of target gsl.debug.run
gsl.debug: RUN failed. Output:
./gsl.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
gsl.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
9/10 Test #8: umfpack.debug ....................***Failed 15.48 sec
gmake[7]: ***
[tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/umfpack.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:13890:
tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:13897:
tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4727: umfpack.debug.run] Error 2
Test umfpack.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 2%] Built target kill-umfpack.debug-OK
[ 6%] Built target obj_sundials_inst
[ 6%] Built target obj_sundials_debug
[ 17%] Built target obj_tbb_debug
[ 17%] Built target obj_umfpack_GENERIC_debug
[ 17%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 20%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 24%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 24%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 28%] Built target obj_umfpack_L_UMFPACK_debug
[ 28%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 28%] Built target obj_umfpack_DI_TSOLVE_debug
[ 33%] Built target obj_umfpack_I_UMF_debug
[ 33%] Built target obj_umfpack_DI_STORE_debug
[ 35%] Built target obj_umfpack_L_UMF_debug
[ 40%] Built target obj_umfpack_DI_SOLVE_debug
[ 40%] Built target obj_umfpack_DL_TSOLVE_debug
[ 40%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 40%] Built target obj_umfpack_I_UMFPACK_debug
[ 44%] Built target obj_umfpack_DL_STORE_debug
[ 51%] Built target obj_umfpack_DL_SOLVE_debug
[ 51%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 51%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 51%] Built target obj_amd_int_debug
[ 51%] Built target obj_amd_long_debug
[ 57%] Built target obj_amd_global_debug
[ 60%] Built target obj_muparser_debug
[ 60%] Built target expand_instantiations_exe
[ 60%] Built target obj_numerics_inst
[ 71%] Built target obj_numerics_debug
[ 71%] Built target obj_fe_inst
[ 82%] Built target obj_fe_debug
[ 82%] Built target obj_dofs_inst
[ 82%] Built target obj_dofs_debug
[ 84%] Built target obj_lac_inst
[ 88%] Built target obj_lac_debug
[ 88%] Built target obj_base_inst
[ 91%] Built target obj_base_debug
[ 91%] Built target obj_gmsh_inst
[ 91%] Built target obj_gmsh_debug
[ 93%] Built target obj_grid_inst
[ 93%] Built target obj_grid_debug
[ 93%] Built target obj_hp_inst
[ 95%] Built target obj_hp_debug
[ 95%] Built target obj_multigrid_inst
[ 95%] Built target obj_multigrid_debug
[ 95%] Built target obj_distributed_inst
[ 95%] Built target obj_distributed_debug
[ 95%] Built target obj_algorithms_inst
[ 95%] Built target obj_algorithms_debug
[ 95%] Built target obj_matrix_free_inst
[ 95%] Built target obj_matrix_free_debug
[ 95%] Built target obj_meshworker_inst
[ 95%] Built target obj_meshworker_debug
Built target obj_opencascade_inst
[ 2%] Built target obj_opencascade_debug
[ 2%] Built target obj_particle_inst
[ 2%] Built target obj_particle_debug
[ 2%] Built target obj_differentiation_ad_inst
[ 2%] Built target obj_differentiation_ad_debug
[ 2%] Built target obj_physics_inst
[ 6%] Built target obj_physics_debug
[ 6%] Built target obj_physics_elasticity_inst
[ 6%] Built target obj_physics_elasticity_debug
[ 6%] Built target obj_non_matching_inst
[ 9%] Built target obj_non_matching_debug
[ 13%] Built target deal_II.g
Scanning dependencies of target umfpack.debug
[ 27%] Building CXX object
tests/quick_tests/CMakeFiles/umfpack.debug.dir/umfpack.cc.o
[ 86%] Linking CXX executable umfpack.debug
[100%] Built target umfpack.debug
Scanning dependencies of target umfpack.debug.run
umfpack.debug: RUN failed. Output:
./umfpack.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
umfpack.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
10/10 Test #10: boost_zlib.debug .................***Failed 12.65 sec
gmake[7]: ***
[tests/quick_tests/CMakeFiles/boost_zlib.debug.run.dir/build.make:57:
tests/quick_tests/CMakeFiles/boost_zlib.debug.run] Error 1
gmake[6]: *** [CMakeFiles/Makefile2:14021:
tests/quick_tests/CMakeFiles/boost_zlib.debug.run.dir/all] Error 2
gmake[5]: *** [CMakeFiles/Makefile2:14028:
tests/quick_tests/CMakeFiles/boost_zlib.debug.run.dir/rule] Error 2
gmake[4]: *** [Makefile:4779: boost_zlib.debug.run] Error 2
Test boost_zlib.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-boost_zlib.debug-OK
[ 0%] Built target obj_sundials_inst
[ 0%] Built target obj_sundials_debug
[ 4%] Built target obj_tbb_debug
[ 4%] Built target obj_umfpack_GENERIC_debug
[ 4%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 9%] Built target obj_umfpack_L_UMFPACK_debug
[ 9%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 9%] Built target obj_umfpack_DI_TSOLVE_debug
[ 15%] Built target obj_umfpack_I_UMF_debug
[ 15%] Built target obj_umfpack_DI_STORE_debug
[ 22%] Built target obj_umfpack_L_UMF_debug
[ 22%] Built target obj_umfpack_DI_SOLVE_debug
[ 22%] Built target obj_umfpack_DL_TSOLVE_debug
[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 29%] Built target obj_umfpack_I_UMFPACK_debug
[ 29%] Built target obj_umfpack_DL_STORE_debug
[ 29%] Built target obj_umfpack_DL_SOLVE_debug
[ 29%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 29%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 31%] Built target obj_amd_int_debug
[ 34%] Built target obj_amd_long_debug
[ 34%] Built target obj_amd_global_debug
[ 36%] Built target obj_muparser_debug
[ 36%] Built target expand_instantiations_exe
[ 40%] Built target obj_numerics_inst
[ 45%] Built target obj_numerics_debug
[ 52%] Built target obj_fe_inst
[ 61%] Built target obj_fe_debug
[ 61%] Built target obj_dofs_inst
[ 63%] Built target obj_dofs_debug
[ 65%] Built target obj_lac_inst
[ 72%] Built target obj_lac_debug
[ 72%] Built target obj_base_inst
[ 84%] Built target obj_base_debug
[ 86%] Built target obj_gmsh_inst
[ 86%] Built target obj_gmsh_debug
[ 88%] Built target obj_grid_inst
[ 90%] Built target obj_grid_debug
[ 93%] Built target obj_hp_inst
[ 93%] Built target obj_hp_debug
[ 95%] Built target obj_multigrid_inst
[ 95%] Built target obj_multigrid_debug
[ 95%] Built target obj_distributed_inst
[ 97%] Built target obj_distributed_debug
[ 97%] Built target obj_algorithms_inst
[ 97%] Built target obj_algorithms_debug
[ 97%] Built target obj_matrix_free_inst
[100%] Built target obj_matrix_free_debug
[100%] Built target obj_meshworker_inst
[100%] Built target obj_meshworker_debug
[100%] Built target obj_opencascade_inst
[100%] Built target obj_opencascade_debug
[100%] Built target obj_particle_inst
[100%] Built target obj_particle_debug
[100%] Built target obj_differentiation_ad_inst
[100%] Built target obj_differentiation_ad_debug
[100%] Built target obj_physics_inst
[100%] Built target obj_physics_debug
[100%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_debug
[100%] Built target obj_non_matching_inst
[102%] Built target obj_non_matching_debug
[102%] Built target deal_II.g
Scanning dependencies of target boost_zlib.debug
[102%] Building CXX object
tests/quick_tests/CMakeFiles/boost_zlib.debug.dir/boost_zlib.cc.o
[102%] Linking CXX executable boost_zlib.debug
[102%] Built target boost_zlib.debug
Scanning dependencies of target boost_zlib.debug.run
boost_zlib.debug: RUN failed. Output:
./boost_zlib.debug: symbol lookup error: /lib64/libgsl.so.23: undefined symbol:
cblas_ctrmv
boost_zlib.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/kylew/servers/storage/deal.II/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
0% tests passed, 10 tests failed out of 10
Total Test time (real) = 47.86 sec
The following tests FAILED:
1 - step.debug (Failed)
2 - step.release (Failed)
3 - affinity.debug (Failed)
4 - mpi.debug (Failed)
5 - tbb.debug (Failed)
6 - p4est.debug (Failed)
7 - lapack.debug (Failed)
8 - umfpack.debug (Failed)
9 - gsl.debug (Failed)
10 - boost_zlib.debug (Failed)
[ERROR_MESSAGE]
Errors while running CTest
