I am using the master version from 2 days ago. Commit c4c4e5209a. Actually,
it also fails for the 2D, but in a different scenario. I run this for
mpirun=1 and mpirun=4.
It fails in 2D for mpirun=1.debug, with the same error. It fails for 3D for
mpirun=4.debug, mpirun=1.release. And fully succeeds for mpirun=4.release...
I have attached the output from ctest.
On Wednesday, August 21, 2019 at 5:39:11 AM UTC-4, Marc Fehling wrote:
>
> Hi Doug!
>
> On Wednesday, August 21, 2019 at 4:00:49 AM UTC+2, Doug wrote:
>>
>> 8134: void dealii::parallel::distributed::SolutionTransfer<dim,
>> VectorType, DoFHandlerType>::unpack_callback(const typename
>> dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
>> space_dimension>::cell_iterator&, typename
>> dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
>> space_dimension>::CellStatus, const
>> boost::iterator_range<__gnu_cxx::__normal_iterator<const char*,
>> std::vector<char, std::allocator<char> > > >&, std::vector<VectorType*>&)
>> [with int dim = 3; VectorType =
>> dealii::LinearAlgebra::distributed::Vector<double>; DoFHandlerType =
>> dealii::hp::DoFHandler<3, 3>; typename
>> dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
>> space_dimension>::cell_iterator =
>> dealii::TriaIterator<dealii::CellAccessor<3, 3> >; typename
>> dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
>> space_dimension>::CellStatus = dealii::Triangulation<3, 3>::CellStatus]
>>
>
> It seems that the assertion fails only in the 3D case, which is quite
> interesting. Are you using the deal.II-9.1 release version, or do you work
> with the current master branch? I'll try to reproduce the error once I'm at
> my desk.
>
> It looks like either p::d::SolutionTransfer picks the wrong finite element
> while packing the solution on cells to be coarsened, or hp::DoFHandler
> chooses the wrong finite element for the parent cell in case of coarsening.
> I'll investigate.
>
> Marc
>
--
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UpdateCTestConfiguration from
:/home/ddong/Libraries/dealii/build/DartConfiguration.tcl
UpdateCTestConfiguration from
:/home/ddong/Libraries/dealii/build/DartConfiguration.tcl
Test project /home/ddong/Libraries/dealii/build
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 8132
Start 8132: mpi/solution_transfer_05.mpirun=1.debug
8132: Test command: /usr/bin/cmake
"-DTRGT=solution_transfer_05.mpirun1.debug.diff"
"-DTEST=mpi/solution_transfer_05.mpirun=1.debug" "-DEXPECT=PASSED"
"-DBINARY_DIR=/home/ddong/Libraries/dealii/build/tests/mpi"
"-DGUARD_FILE=/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/interrupt_guard.cc"
"-P" "/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake"
8132: Test timeout computed to be: 600
8132: make[3]: *** [solution_transfer_05.debug/mpirun=1/output] Error 1
8132: make[2]: *** [CMakeFiles/solution_transfer_05.mpirun1.debug.diff.dir/all]
Error 2
8132: make[1]: ***
[CMakeFiles/solution_transfer_05.mpirun1.debug.diff.dir/rule] Error 2
8132: make: *** [solution_transfer_05.mpirun1.debug.diff] Error 2
8132: Test mpi/solution_transfer_05.mpirun=1.debug: RUN
8132: =============================== OUTPUT BEGIN
===============================
8132: Scanning dependencies of target solution_transfer_05.debug
8132: Building CXX object
CMakeFiles/solution_transfer_05.debug.dir/solution_transfer_05.cc.o
8132: Linking CXX executable
solution_transfer_05.debug/solution_transfer_05.debug
8132: Built target solution_transfer_05.debug
8132: Generating solution_transfer_05.debug/mpirun=1/output
8132: mpi/solution_transfer_05.mpirun=1.debug: BUILD successful.
8132: mpi/solution_transfer_05.mpirun=1.debug: RUN failed. ------ Return code
134
8132: mpi/solution_transfer_05.mpirun=1.debug: RUN failed. ------ Result:
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/mpirun=1/failing_output
8132: mpi/solution_transfer_05.mpirun=1.debug: RUN failed. ------ Partial
output:
8132: JobId ddong-XPS-13-9360 Tue Aug 20 21:50:34 2019
8132: DEAL:: 2D solution transfer
8132:
8132: mpi/solution_transfer_05.mpirun=1.debug: RUN failed. ------ Additional
output on stdout/stderr:
8132:
8132: written to before.eps
8132:
8132: written to after.eps
8132:
8132:
8132: --------------------------------------------------------
8132: An error occurred in line <405> of file
</home/ddong/Libraries/dealii/source/distributed/solution_transfer.cc> in
function
8132: void dealii::parallel::distributed::SolutionTransfer<dim, VectorType,
DoFHandlerType>::unpack_callback(const typename
dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
space_dimension>::cell_iterator&, typename
dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
space_dimension>::CellStatus, const
boost::iterator_range<__gnu_cxx::__normal_iterator<const char*,
std::vector<char, std::allocator<char> > > >&, std::vector<VectorType*>&) [with
int dim = 2; VectorType = dealii::LinearAlgebra::distributed::Vector<double>;
DoFHandlerType = dealii::hp::DoFHandler<2, 2>; typename
dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
space_dimension>::cell_iterator = dealii::TriaIterator<dealii::CellAccessor<2,
2> >; typename dealii::parallel::distributed::Triangulation<dim,
DoFHandlerType:: space_dimension>::CellStatus = dealii::Triangulation<2,
2>::CellStatus]
8132: The violated condition was:
8132: dof_handler->get_fe(fe_index).dofs_per_cell == it_dofvalues->size()
8132: Additional information:
8132: The transferred data was packed with a different number of dofs than
the currently registered FE object assigned to the DoFHandler has.
8132: --------------------------------------------------------
8132:
8132: [ddong-XPS-13-9360:16518] *** Process received signal ***
8132: [ddong-XPS-13-9360:16518] Signal: Aborted (6)
8132: [ddong-XPS-13-9360:16518] Signal code: (-6)
8132: [ddong-XPS-13-9360:16518] [ 0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7f2413c37890]
8132: [ddong-XPS-13-9360:16518] [ 1]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f2412f31e97]
8132: [ddong-XPS-13-9360:16518] [ 2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f2412f33801]
8132: [ddong-XPS-13-9360:16518] [ 3]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZN6dealii18deal_II_exceptions9internals22do_issue_error_nothrowERKNS_13ExceptionBaseE+0x0)[0x7f24292a8087]
8132: [ddong-XPS-13-9360:16518] [ 4]
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/solution_transfer_05.debug(_ZN6dealii18deal_II_exceptions9internals20issue_error_noreturnINS_18StandardExceptions10ExcMessageEEEvNS1_17ExceptionHandlingEPKciS7_S7_S7_T_+0x88)[0x557961618179]
8132: [ddong-XPS-13-9360:16518] [ 5]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZN6dealii8parallel11distributed16SolutionTransferILi2ENS_13LinearAlgebra11distributed6VectorIdNS_11MemorySpace4HostEEENS_2hp10DoFHandlerILi2ELi2EEEE15unpack_callbackERKNS_12TriaIteratorINS_12CellAccessorILi2ELi2EEEEENS_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEERSS_IPS8_SaISZ_EE+0x4a8)[0x7f242aca4056]
8132: [ddong-XPS-13-9360:16518] [ 6]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZSt13__invoke_implIvRMN6dealii8parallel11distributed16SolutionTransferILi2ENS0_13LinearAlgebra11distributed6VectorIdNS0_11MemorySpace4HostEEENS0_2hp10DoFHandlerILi2ELi2EEEEEFvRKNS0_12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEENS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEERST_IPS9_SaIS10_EEERPSD_JSJ_SM_SZ_S13_EET_St21__invoke_memfun_derefOT0_OT1_DpOT2_+0xc5)[0x7f242ad9d726]
8132: [ddong-XPS-13-9360:16518] [ 7]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZSt8__invokeIRMN6dealii8parallel11distributed16SolutionTransferILi2ENS0_13LinearAlgebra11distributed6VectorIdNS0_11MemorySpace4HostEEENS0_2hp10DoFHandlerILi2ELi2EEEEEFvRKNS0_12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEENS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEERST_IPS9_SaIS10_EEEJRPSD_SJ_SM_SZ_S13_EENSt15__invoke_resultIT_JDpT0_EE4typeEOS1A_DpOS1B_+0xa0)[0x7f242ad898b4]
8132: [ddong-XPS-13-9360:16518] [ 8]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNSt5_BindIFMN6dealii8parallel11distributed16SolutionTransferILi2ENS0_13LinearAlgebra11distributed6VectorIdNS0_11MemorySpace4HostEEENS0_2hp10DoFHandlerILi2ELi2EEEEEFvRKNS0_12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEENS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEERST_IPS9_SaIS10_EEEPSD_St12_PlaceholderILi1EES17_ILi2EES17_ILi3EESt17reference_wrapperIS12_EEE6__callIvJSJ_OSM_SZ_EJLm0ELm1ELm2ELm3ELm4EEEET_OSt5tupleIJDpT0_EESt12_Index_tupleIJXspT1_EEE+0x10b)[0x7f242ad6be75]
8132: [ddong-XPS-13-9360:16518] [ 9]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNSt5_BindIFMN6dealii8parallel11distributed16SolutionTransferILi2ENS0_13LinearAlgebra11distributed6VectorIdNS0_11MemorySpace4HostEEENS0_2hp10DoFHandlerILi2ELi2EEEEEFvRKNS0_12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEENS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEERST_IPS9_SaIS10_EEEPSD_St12_PlaceholderILi1EES17_ILi2EES17_ILi3EESt17reference_wrapperIS12_EEEclIJSJ_SM_SZ_EvEET0_DpOT_+0x84)[0x7f242ad4a5e6]
8132: [ddong-XPS-13-9360:16518] [10]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNSt17_Function_handlerIFvRKN6dealii12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEENS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEEESt5_BindIFMNS0_8parallel11distributed16SolutionTransferILi2ENS0_13LinearAlgebra11distributed6VectorIdNS0_11MemorySpace4HostEEENS0_2hp10DoFHandlerILi2ELi2EEEEEFvS6_S9_SM_RSG_IPSX_SaIS12_EEEPS11_St12_PlaceholderILi1EES19_ILi2EES19_ILi3EESt17reference_wrapperIS14_EEEE9_M_invokeERKSt9_Any_dataS6_OS9_SM_+0x67)[0x7f242ad272bb]
8132: [ddong-XPS-13-9360:16518] [11]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNKSt8functionIFvRKN6dealii12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEENS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEEEEclES6_S9_SM_+0x75)[0x7f242adfecad]
8132: [ddong-XPS-13-9360:16518] [12]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNSt17_Function_handlerIFvRKN6dealii12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEERKNS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEEESt8functionIFvS6_S9_SO_EEE9_M_invokeERKSt9_Any_dataS6_SB_SO_+0x65)[0x7f242adf9792]
8132: [ddong-XPS-13-9360:16518] [13]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNKSt8functionIFvRKN6dealii12TriaIteratorINS0_12CellAccessorILi2ELi2EEEEERKNS0_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEEEEclES6_SB_SO_+0x76)[0x7f242adf532a]
8132: [ddong-XPS-13-9360:16518] [14]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZNK6dealii8parallel11distributed13TriangulationILi2ELi2EE12DataTransfer11unpack_dataERKSt6vectorISt5tupleIJP14p4est_quadrantNS_13TriangulationILi2ELi2EE10CellStatusENS_12TriaIteratorINS_12CellAccessorILi2ELi2EEEEEEESaISG_EEjRKSt8functionIFvRKSF_RKSB_RKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcS5_IcSaIcEEEEEEEE+0x64e)[0x7f242add5c34]
8132: [ddong-XPS-13-9360:16518] [15]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZN6dealii8parallel11distributed13TriangulationILi2ELi2EE22notify_ready_to_unpackEjRKSt8functionIFvRKNS_12TriaIteratorINS_12CellAccessorILi2ELi2EEEEENS_13TriangulationILi2ELi2EE10CellStatusERKN5boost14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcSt6vectorIcSaIcEEEEEEEE+0x527)[0x7f242add03a5]
8132: [ddong-XPS-13-9360:16518] [16]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZN6dealii8parallel11distributed16SolutionTransferILi2ENS_13LinearAlgebra11distributed6VectorIdNS_11MemorySpace4HostEEENS_2hp10DoFHandlerILi2ELi2EEEE11interpolateERSt6vectorIPS8_SaISE_EE+0x280)[0x7f242aca3000]
8132: [ddong-XPS-13-9360:16518] [17]
/home/ddong/Libraries/dealii/build/lib/libdeal_II.g.so.9.2.0-pre(_ZN6dealii8parallel11distributed16SolutionTransferILi2ENS_13LinearAlgebra11distributed6VectorIdNS_11MemorySpace4HostEEENS_2hp10DoFHandlerILi2ELi2EEEE11interpolateERS8_+0x6c)[0x7f242aca31b8]
8132: [ddong-XPS-13-9360:16518] [18]
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/solution_transfer_05.debug(_Z8transferILi2EEvRSo+0x7e6)[0x55796161adc9]
8132: [ddong-XPS-13-9360:16518] [19]
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/solution_transfer_05.debug(main+0x95)[0x55796160d1bb]
8132: [ddong-XPS-13-9360:16518] [20]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f2412f14b97]
8132: [ddong-XPS-13-9360:16518] [21]
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/solution_transfer_05.debug(_start+0x2a)[0x55796160b55a]
8132: [ddong-XPS-13-9360:16518] *** End of error message ***
8132: --------------------------------------------------------------------------
8132: mpiexec noticed that process rank 0 with PID 0 on node ddong-XPS-13-9360
exited on signal 6 (Aborted).
8132: --------------------------------------------------------------------------
8132: CMakeFiles/solution_transfer_05.mpirun1.debug.diff.dir/build.make:69:
recipe for target 'solution_transfer_05.debug/mpirun=1/output' failed
8132: CMakeFiles/Makefile2:13795: recipe for target
'CMakeFiles/solution_transfer_05.mpirun1.debug.diff.dir/all' failed
8132: CMakeFiles/Makefile2:13802: recipe for target
'CMakeFiles/solution_transfer_05.mpirun1.debug.diff.dir/rule' failed
8132: Makefile:5706: recipe for target
'solution_transfer_05.mpirun1.debug.diff' failed
8132:
8132:
8132: mpi/solution_transfer_05.mpirun=1.debug: ****** RUN failed *******
8132:
8132: =============================== OUTPUT END
===============================
8132: Expected stage PASSED - aborting
8132: CMake Error at
/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake:140
(MESSAGE):
8132: *** abort
8132:
8132:
1/4 Test #8132: mpi/solution_transfer_05.mpirun=1.debug .....***Failed 59.73
sec
test 8133
Start 8133: mpi/solution_transfer_05.mpirun=1.release
8133: Test command: /usr/bin/cmake
"-DTRGT=solution_transfer_05.mpirun1.release.diff"
"-DTEST=mpi/solution_transfer_05.mpirun=1.release" "-DEXPECT=PASSED"
"-DBINARY_DIR=/home/ddong/Libraries/dealii/build/tests/mpi"
"-DGUARD_FILE=/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.release/interrupt_guard.cc"
"-P" "/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake"
8133: Test timeout computed to be: 600
8133: make[3]: *** [solution_transfer_05.release/mpirun=1/diff] Error 1
8133: make[2]: ***
[CMakeFiles/solution_transfer_05.mpirun1.release.diff.dir/all] Error 2
8133: make[1]: ***
[CMakeFiles/solution_transfer_05.mpirun1.release.diff.dir/rule] Error 2
8133: make: *** [solution_transfer_05.mpirun1.release.diff] Error 2
8133: Test mpi/solution_transfer_05.mpirun=1.release: DIFF
8133: =============================== OUTPUT BEGIN
===============================
8133: Scanning dependencies of target solution_transfer_05.release
8133: [ 0%] Building CXX object
CMakeFiles/solution_transfer_05.release.dir/solution_transfer_05.cc.o
8133: [ 0%] Linking CXX executable
solution_transfer_05.release/solution_transfer_05.release
8133: [ 0%] Built target solution_transfer_05.release
8133: [100%] Generating solution_transfer_05.release/mpirun=1/output
8133: [100%] Generating solution_transfer_05.release/mpirun=1/diff
8133: mpi/solution_transfer_05.mpirun=1.release: BUILD successful.
8133: mpi/solution_transfer_05.mpirun=1.release: RUN successful.
8133: mpi/solution_transfer_05.mpirun=1.release: DIFF failed. ------ Source:
/home/ddong/Libraries/dealii/tests/mpi/solution_transfer_05.mpirun=1.output
8133: mpi/solution_transfer_05.mpirun=1.release: DIFF failed. ------ Result:
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.release/mpirun=1/output
8133: Check
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.release/mpirun=1/output
/home/ddong/Libraries/dealii/tests/mpi/solution_transfer_05.mpirun=1.output
8133: mpi/solution_transfer_05.mpirun=1.release: DIFF failed. ------ Diff:
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.release/mpirun=1/failing_diff
8133: mpi/solution_transfer_05.mpirun=1.release: DIFF failed. ------ First 8
lines of numdiff/diff output:
8133: ----------------
8133: ##3 #:7 <== 0
8133: ##3 #:7 ==> 12.9597
8133: @ Absolute error = 1.2959700000e+1, Relative error = Inf
8133: ----------------
8133: ##5 #:7 <== 0
8133: ##5 #:7 ==> nan
8133: @ @@
8133: mpi/solution_transfer_05.mpirun=1.release: DIFF failed. ------ First 50
lines diff output:
8133: ***
/home/ddong/Libraries/dealii/tests/mpi/solution_transfer_05.mpirun=1.output
Tue Aug 20 01:15:33 2019
8133: --- output Tue Aug 20 21:51:04 2019
8133: ***************
8133: *** 1,5 ****
8133:
8133: DEAL:: 2D solution transfer
8133: ! DEAL::Error in interpolating hp FE_DGQ: 0
8133: DEAL:: 3D solution transfer
8133: ! DEAL::Error in interpolating hp FE_DGQ: 0
8133: --- 1,5 ----
8133:
8133: DEAL:: 2D solution transfer
8133: ! DEAL::Error in interpolating hp FE_DGQ: 12.9597
8133: DEAL:: 3D solution transfer
8133: ! DEAL::Error in interpolating hp FE_DGQ: nan
8133: CMakeFiles/solution_transfer_05.mpirun1.release.diff.dir/build.make:64:
recipe for target 'solution_transfer_05.release/mpirun=1/diff' failed
8133: CMakeFiles/Makefile2:5091: recipe for target
'CMakeFiles/solution_transfer_05.mpirun1.release.diff.dir/all' failed
8133: CMakeFiles/Makefile2:5098: recipe for target
'CMakeFiles/solution_transfer_05.mpirun1.release.diff.dir/rule' failed
8133: Makefile:2170: recipe for target
'solution_transfer_05.mpirun1.release.diff' failed
8133:
8133:
8133: mpi/solution_transfer_05.mpirun=1.release: ****** DIFF failed
*******
8133:
8133: =============================== OUTPUT END
===============================
8133: Expected stage PASSED - aborting
8133: CMake Error at
/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake:140
(MESSAGE):
8133: *** abort
8133:
8133:
2/4 Test #8133: mpi/solution_transfer_05.mpirun=1.release ...***Failed 26.96
sec
test 8134
Start 8134: mpi/solution_transfer_05.mpirun=4.debug
8134: Test command: /usr/bin/cmake
"-DTRGT=solution_transfer_05.mpirun4.debug.diff"
"-DTEST=mpi/solution_transfer_05.mpirun=4.debug" "-DEXPECT=PASSED"
"-DBINARY_DIR=/home/ddong/Libraries/dealii/build/tests/mpi"
"-DGUARD_FILE=/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/interrupt_guard.cc"
"-P" "/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake"
8134: Test timeout computed to be: 600
8134: make[3]: *** [solution_transfer_05.debug/mpirun=4/output] Error 1
8134: make[2]: *** [CMakeFiles/solution_transfer_05.mpirun4.debug.diff.dir/all]
Error 2
8134: make[1]: ***
[CMakeFiles/solution_transfer_05.mpirun4.debug.diff.dir/rule] Error 2
8134: make: *** [solution_transfer_05.mpirun4.debug.diff] Error 2
8134: Test mpi/solution_transfer_05.mpirun=4.debug: RUN
8134: =============================== OUTPUT BEGIN
===============================
8134: Built target solution_transfer_05.debug
8134: Generating solution_transfer_05.debug/mpirun=4/output
8134: mpi/solution_transfer_05.mpirun=4.debug: BUILD successful.
8134: mpi/solution_transfer_05.mpirun=4.debug: RUN failed. ------ Return code
255
8134: mpi/solution_transfer_05.mpirun=4.debug: RUN failed. ------ Result:
/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.debug/mpirun=4/failing_output
8134: mpi/solution_transfer_05.mpirun=4.debug: RUN failed. ------ Partial
output:
8134: JobId ddong-XPS-13-9360 Tue Aug 20 21:51:06 2019
8134: DEAL:: 2D solution transfer
8134: DEAL::Error in interpolating hp FE_DGQ: 2.40807e-13
8134: DEAL:: 3D solution transfer
8134:
8134: mpi/solution_transfer_05.mpirun=4.debug: RUN failed. ------ Additional
output on stdout/stderr:
8134:
8134: written to before.eps
8134:
8134: written to before.eps
8134:
8134: written to before.eps
8134:
8134: written to before.eps
8134:
8134: written to after.eps
8134:
8134: written to after.eps
8134:
8134: written to after.eps
8134:
8134: written to after.eps
8134:
8134:
8134: --------------------------------------------------------
8134: An error occurred in line <405> of file
</home/ddong/Libraries/dealii/source/distributed/solution_transfer.cc> in
function
8134: void dealii::parallel::distributed::SolutionTransfer<dim, VectorType,
DoFHandlerType>::unpack_callback(const typename
dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
space_dimension>::cell_iterator&, typename
dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
space_dimension>::CellStatus, const
boost::iterator_range<__gnu_cxx::__normal_iterator<const char*,
std::vector<char, std::allocator<char> > > >&, std::vector<VectorType*>&) [with
int dim = 3; VectorType = dealii::LinearAlgebra::distributed::Vector<double>;
DoFHandlerType = dealii::hp::DoFHandler<3, 3>; typename
dealii::parallel::distributed::Triangulation<dim, DoFHandlerType::
space_dimension>::cell_iterator = dealii::TriaIterator<dealii::CellAccessor<3,
3> >; typename dealii::parallel::distributed::Triangulation<dim,
DoFHandlerType:: space_dimension>::CellStatus = dealii::Triangulation<3,
3>::CellStatus]
8134: The violated condition was:
8134: dof_handler->get_fe(fe_index).dofs_per_cell == it_dofvalues->size()
8134: Additional information:
8134: The transferred data was packed with a different number of dofs than
the currently registered FE object assigned to the DoFHandler has.
8134: --------------------------------------------------------
8134:
8134: Calling MPI_Abort now.
8134: To break execution in a GDB session, execute 'break MPI_Abort' before
running. You can also put the following into your ~/.gdbinit:
8134: set breakpoint pending on
8134: break MPI_Abort
8134: set breakpoint pending auto
8134: --------------------------------------------------------------------------
8134: MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD
8134: with errorcode 255.
8134:
8134: NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
8134: You may or may not see output from other processes, depending on
8134: exactly when Open MPI kills them.
8134: --------------------------------------------------------------------------
8134: CMakeFiles/solution_transfer_05.mpirun4.debug.diff.dir/build.make:69:
recipe for target 'solution_transfer_05.debug/mpirun=4/output' failed
8134: CMakeFiles/Makefile2:5059: recipe for target
'CMakeFiles/solution_transfer_05.mpirun4.debug.diff.dir/all' failed
8134: CMakeFiles/Makefile2:5066: recipe for target
'CMakeFiles/solution_transfer_05.mpirun4.debug.diff.dir/rule' failed
8134: Makefile:2157: recipe for target
'solution_transfer_05.mpirun4.debug.diff' failed
8134:
8134:
8134: mpi/solution_transfer_05.mpirun=4.debug: ****** RUN failed *******
8134:
8134: =============================== OUTPUT END
===============================
8134: Expected stage PASSED - aborting
8134: CMake Error at
/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake:140
(MESSAGE):
8134: *** abort
8134:
8134:
3/4 Test #8134: mpi/solution_transfer_05.mpirun=4.debug .....***Failed 3.60
sec
test 8135
Start 8135: mpi/solution_transfer_05.mpirun=4.release
8135: Test command: /usr/bin/cmake
"-DTRGT=solution_transfer_05.mpirun4.release.diff"
"-DTEST=mpi/solution_transfer_05.mpirun=4.release" "-DEXPECT=PASSED"
"-DBINARY_DIR=/home/ddong/Libraries/dealii/build/tests/mpi"
"-DGUARD_FILE=/home/ddong/Libraries/dealii/build/tests/mpi/solution_transfer_05.release/interrupt_guard.cc"
"-P" "/home/ddong/Libraries/dealii/build/share/deal.II/scripts/run_test.cmake"
8135: Test timeout computed to be: 600
8135: Test mpi/solution_transfer_05.mpirun=4.release: PASSED
8135: =============================== OUTPUT BEGIN
===============================
8135: mpi/solution_transfer_05.mpirun=4.release: PASSED.
8135: =============================== OUTPUT END
===============================
4/4 Test #8135: mpi/solution_transfer_05.mpirun=4.release ... Passed 2.77
sec
The following tests passed:
mpi/solution_transfer_05.mpirun=4.release
25% tests passed, 3 tests failed out of 4
Total Test time (real) = 93.76 sec
The following tests FAILED:
8132 - mpi/solution_transfer_05.mpirun=1.debug (Failed)
8133 - mpi/solution_transfer_05.mpirun=1.release (Failed)
8134 - mpi/solution_transfer_05.mpirun=4.debug (Failed)
Errors while running CTest
