Did you try the pre-compiled deal.II package? Both
dealii-9.1.1-clang-9.0.0.dmg and dealii-9.1.1-catalina-haswell-ro.dmg.zip from https://github.com/dealii/dealii/releases/tag/v9.1.1 should work. Luca. > On 25 Jan 2020, at 21:29, Ihar Suvorau <ihar.suvo...@gmail.com> wrote: > > > Software: > • macOS Catalina 10.15.2 > • deal.ii 9.1.1 > • PETSc 3.12 > Question: > > Hey, does somebody know a potential reason for this message while running a > well-compiled step-40 program: > > ihar@husky build3 % ./step-40 > > > Running with PETSc on 1 MPI rank(s)... > > Cycle 0: > > Number of active cells: 1024 > > Number of degrees of freedom: 4225 > > > > ------------------------------------------------------- > > > An error occurred in line <543> of file > </Users/ihar/lib/dealii-9.1.1/source/lac/petsc_precondition.cc> in function > > void dealii::PETScWrappers::PreconditionBoomerAMG::initialize(const > dealii::PETScWrappers::MatrixBase &, const > dealii::PETScWrappers::PreconditionBoomerAMG::AdditionalData &) > > The violated condition was: > > false > > Additional information: > > Your PETSc installation does not include a copy of the hypre package > necessary for this preconditioner. > > > > Stacktrace: > > ----------- > > #0 2 libdeal_II.g.9.1.1.dylib 0x000000011188b86f > _ZN6dealii13PETScWrappers21PreconditionBoomerAMG10initializeERKNS0_10MatrixBaseERKNS1_14AdditionalDataE > + 95: 2 libdeal_II.g.9.1.1.dylib 0x000000011188b86f > _ZN6dealii13PETScWrappers21PreconditionBoomerAMG10initializeERKNS0_10MatrixBaseERKNS1_14AdditionalDataE > > #1 3 step-40 0x000000010643881a > _ZN6Step4014LaplaceProblemILi2EE5solveEv + 266: 3 step-40 > 0x000000010643881a _ZN6Step4014LaplaceProblemILi2EE5solveEv > > #2 4 step-40 0x000000010642e633 > _ZN6Step4014LaplaceProblemILi2EE3runEv + 451: 4 step-40 > 0x000000010642e633 _ZN6Step4014LaplaceProblemILi2EE3runEv > > #3 5 step-40 0x000000010642e23a main + 106: 5 > step-40 0x000000010642e23a main > > #4 6 libdyld.dylib 0x00007fff6350f7fd start + 1: 6 > libdyld.dylib 0x00007fff6350f7fd start > > -------------------------------------------------------- > > > > [husky:92536] *** Process received signal *** > > [husky:92536] Signal: Abort trap: 6 (6) > > [husky:92536] Signal code: (0) > > [husky:92536] [ 0] 0 libsystem_platform.dylib 0x00007fff6370842d > _sigtramp + 29 > > [husky:92536] [ 1] 0 ??? 0x00007ffee97d8838 > 0x0 + 140732815738936 > > [husky:92536] [ 2] 0 libsystem_c.dylib 0x00007fff635dda1c > abort + 120 > > [husky:92536] [ 3] 0 libdeal_II.g.9.1.1.dylib 0x00000001119ec74d > _ZN6dealii18deal_II_exceptions9internals5abortERKNS_13ExceptionBaseE + 205 > > [husky:92536] [ 4] 0 libdeal_II.g.9.1.1.dylib 0x000000010de0f63f > _ZN6dealii18deal_II_exceptions9internals20issue_error_noreturnINS_18StandardExceptions10ExcMessageEEEvNS1_17ExceptionHandlingEPKciS7_S7_S7_T_ > + 223 > > [husky:92536] [ 5] 0 libdeal_II.g.9.1.1.dylib 0x000000011188b86f > _ZN6dealii13PETScWrappers21PreconditionBoomerAMG10initializeERKNS0_10MatrixBaseERKNS1_14AdditionalDataE > + 95 > > [husky:92536] [ 6] 0 step-40 0x000000010643881a > _ZN6Step4014LaplaceProblemILi2EE5solveEv + 266 > > [husky:92536] [ 7] 0 step-40 0x000000010642e633 > _ZN6Step4014LaplaceProblemILi2EE3runEv + 451 > > [husky:92536] [ 8] 0 step-40 0x000000010642e23a > main + 106 > > [husky:92536] [ 9] 0 libdyld.dylib 0x00007fff6350f7fd > start + 1 > > [husky:92536] *** End of error message *** > > > > The thing is that I've compiled PETSC with the "--download-hypre=1" option > and there is a compiled library with the name "libHYPRE-2.18.2.dylib" > alongside "libpetsc.3.12.3.dylib" and others in the folder for my > architecture "arch-darwin-c-debug". Environment variables "PETSC_DIR" and > "PETSC_ARCH" all point to the correct folder like in the instruction at > https://www.dealii.org/developer/external-libs/petsc.html. > > Did I miss something? > > I'm trying to install all the packages with "dealii/candi", but PETSc > compilation fails there also, but for a different reason though > (https://github.com/dealii/candi/issues/133). > > -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > --- > You received this message because you are subscribed to the Google Groups > "deal.II User Group" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to dealii+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/dd55f761-c2fe-458f-964f-399addab2122%40googlegroups.com. -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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