Hello Bruno,
Thanks for replying.
Here I post the output:
cmake -DCMAKE_INSTALL_PREFIX=/home/Felipe/BIGSOFTWARE/dealii-9.0.0/
/home/Felipe/BIGSOFTWARE/dealii-9.0.0
-- This is CMake 3.16.0-rc3
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_external_macros.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_add_flags.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_check_compiler_setup.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_check_cxx_compiler_bug.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_check_mpi_interface.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_clear_cmake_required.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_configure_feature.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_add_definitions.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_add_library.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_add_test.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_find_file.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_find_library.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_find_path.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_find_program.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_insource_setup_target.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_package_handle.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_query_git_information.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_decorate_with_stars.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_enable_if_links.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_enable_if_supported.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_enable_language_optional.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_evaluate_expression.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_expand_instantiations.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_filter_system_libraries.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_find_package.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_find_system_library.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_item_matches.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_purge_feature.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_push_cmake_required.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_register_feature.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_remove_duplicates.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_replace_flag.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_reset_cmake_required.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_set_if_empty.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_setup_source_list.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_setup_unity_target.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_strip_flag.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_switch_library_preference.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_to_string.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_to_string_and_add_prefix.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_unset_if_changed.cmake
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/macros/macro_verbose_include.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_cached_variables.cmake
-- Prepending ${CUDA_NVCC_FLAGS} to ${DEAL_II_CUDA_FLAGS}
--
-- Include /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_deal_ii.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_compiler_flags.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_compiler_flags_gnu.cmake
--
-- Include /home/Felipe/BIGSOFTWARE/dealii-9.0.0/bundled/setup_bundled.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/checks/check_01_cpu_features.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/checks/check_01_cxx_features.cmake
-- Using C++ version flag "-std=c++11"
-- DEAL_II_WITH_CXX17 and DEAL_II_WITH_CXX14 are both disabled
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/checks/check_02_compiler_features.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/checks/check_02_system_features.cmake
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/checks/check_03_compiler_bugs.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_1_cuda.cmake
-- DEAL_II_WITH_CUDA is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_1_lapack.cmake
-- DEAL_II_WITH_LAPACK is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_1_mpi.cmake
-- DEAL_II_WITH_MPI is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_1_threads.cmake
-- TBB_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64 lib)
-- TBB_DEBUG_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES
lib lib64 lib)
-- TBB_INCLUDE_DIR not found! Call:
-- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES
include include/tbb tbb)
-- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***
-- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
NOTFOUND ***
-- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find TBB
-- DEAL_II_WITH_THREADS has unmet external dependencies.
-- DEAL_II_WITH_THREADS successfully set up with bundled packages.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_1_zlib.cmake
-- ZLIB_VERSION: 1.2.7
-- ZLIB_LIBRARIES: /usr/lib64/libz.so
-- ZLIB_INCLUDE_DIRS: /usr/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_2_boost.cmake
-- Could NOT find Boost: Found unsuitable version "1.53.0", but required is
at least "1.59" (found /usr/include)
-- BOOST_LIBRARIES: *** Required variable "Boost_LIBRARIES" empty ***
-- BOOST_INCLUDE_DIRS: /usr/include
-- BOOST_USER_INCLUDE_DIRS: /usr/include
-- Could NOT find BOOST
-- DEAL_II_WITH_BOOST has unmet external dependencies.
-- DEAL_II_WITH_BOOST successfully set up with bundled packages.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_2_metis.cmake
-- DEAL_II_WITH_METIS is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_2_trilinos.cmake
-- DEAL_II_WITH_TRILINOS is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_2_umfpack.cmake
-- DEAL_II_WITH_UMFPACK is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_3_petsc.cmake
-- DEAL_II_WITH_PETSC is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_adolc.cmake
-- DEAL_II_WITH_ADOLC is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_arpack.cmake
-- DEAL_II_WITH_ARPACK is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_assimp.cmake
-- DEAL_II_WITH_ASSIMP is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_gmsh.cmake
-- DEAL_II_WITH_GMSH is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_gsl.cmake
-- DEAL_II_WITH_GSL is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_hdf5.cmake
-- DEAL_II_WITH_HDF5 is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_muparser.cmake
-- MUPARSER_LIBRARY not found! Call:
-- FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS
PATH_SUFFIXES lib lib64 lib)
-- MUPARSER_INCLUDE_DIR not found! Call:
-- FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES
include)
-- MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to
NOTFOUND ***
-- MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR"
set to NOTFOUND ***
-- Could NOT find MUPARSER
-- DEAL_II_WITH_MUPARSER has unmet external dependencies.
-- DEAL_II_WITH_MUPARSER successfully set up with bundled packages.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_nanoflann.cmake
-- DEAL_II_WITH_NANOFLANN is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_netcdf.cmake
-- DEAL_II_WITH_NETCDF is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_opencascade.cmake
-- DEAL_II_WITH_OPENCASCADE is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_p4est.cmake
-- DEAL_II_WITH_P4EST is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_scalapack.cmake
-- DEAL_II_WITH_SCALAPACK is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_slepc.cmake
-- DEAL_II_WITH_SLEPC is set to off.
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_sundials.cmake
-- DEAL_II_WITH_SUNDIALS is set to off.
--
-- Include /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_cpack.cmake
--
-- Include
/home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_custom_targets.cmake
--
-- Include /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_finalize.cmake
CMake Error at cmake/setup_finalize.cmake:95 (MESSAGE):
Configuration error: Cannot compile a test program with the final set of
compiler and linker flags:
CXX flags (DEBUG): -pedantic -fPIC -Wall -Wextra -Wpointer-arith
-Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Woverloaded-virtual
-Wno-deprecated-declarations -Wno-literal-suffix -std=c++11
-Wno-parentheses -Wno-unused-local-typedefs -Og -ggdb
-Wa,--compress-debug-sections
LD flags (DEBUG): -Wl,--as-needed -rdynamic -fuse-ld=gold pthread
-ggdb
LIBRARIES (DEBUG): m;dl;/usr/lib64/libz.so;rt;
Call Stack (most recent call first):
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:132 (VERBOSE_INCLUDE)
-- Configuring incomplete, errors occurred!
See also
"/home/Felipe/BIGSOFTWARE/dealii-9.0.0/build/CMakeFiles/CMakeOutput.log".
See also
"/home/Felipe/BIGSOFTWARE/dealii-9.0.0/build/CMakeFiles/CMakeError.log".
[Felipe@mu01 build]$
On Mon, 10 Feb 2020 at 21:20, Bruno Turcksin <[email protected]>
wrote:
> Felipe,
>
> Can you post everything that deal.II prints on the screen.
>
> Best,
>
> Bruno
>
> On Monday, February 10, 2020 at 1:59:16 AM UTC-5, Felipe Orellana wrote:
>>
>>
>> Hello,
>>
>> My name is Felipe. I am trying to install dealii-9.0.0 on my local
>> cluster.
>>
>> After commanding
>>
>> cmake -DCMAKE_INSTALL_PREFIX=/path2install /path2source
>>
>> with my desired directories (which btw, are the same directory, just
>> /home/Felipe/BIGSOFTWARE/dealii-9.0.0/ ), the system progresses well for
>> almost a minute.. but then I get an error and the installation stops. I
>> paste the error message below.
>>
>> What is there missing in my system?
>>
>> Are there any flags that I could add/write to avoid these errors?
>>
>> I would appreciate your help,
>> cheers,
>> Felipe
>>
>> -- Include
>> /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_scalapack.cmake
>> -- DEAL_II_WITH_SCALAPACK has unmet configuration requirements:
>> DEAL_II_WITH_MPI has to be set to "ON".
>> -- DEAL_II_WITH_SCALAPACK has unmet configuration requirements:
>> DEAL_II_WITH_LAPACK has to be set to "ON".
>> --
>> -- Include
>> /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_slepc.cmake
>> -- DEAL_II_WITH_SLEPC has unmet configuration requirements:
>> DEAL_II_WITH_PETSC has to be set to "ON".
>> --
>> -- Include
>> /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/configure/configure_sundials.cmake
>> -- SUNDIALS_LIB_IDAS not found! Call:
>> -- FIND_LIBRARY(SUNDIALS_LIB_IDAS NAMES sundials_idas HINTS
>> PATH_SUFFIXES lib lib64 lib)
>> -- SUNDIALS_LIB_IDA not found! Call:
>> -- FIND_LIBRARY(SUNDIALS_LIB_IDA NAMES sundials_ida HINTS
>> PATH_SUFFIXES lib lib64 lib)
>> -- SUNDIALS_LIB_ARKODE not found! Call:
>> -- FIND_LIBRARY(SUNDIALS_LIB_ARKODE NAMES sundials_arkode HINTS
>> PATH_SUFFIXES lib lib64 lib)
>> -- SUNDIALS_LIB_KINSOL not found! Call:
>> -- FIND_LIBRARY(SUNDIALS_LIB_KINSOL NAMES sundials_kinsol HINTS
>> PATH_SUFFIXES lib lib64 lib)
>> -- SUNDIALS_LIB_SER not found! Call:
>> -- FIND_LIBRARY(SUNDIALS_LIB_SER NAMES sundials_nvecserial HINTS
>> PATH_SUFFIXES lib lib64 li
>> -- SUNDIALS_INCLUDE_DIR not found! Call:
>> -- FIND_PATH(SUNDIALS_INCLUDE_DIR sundials/sundials_nvector.h HINTS
>> PATH_SUFFIXES include)
>> -- SUNDIALS_LIBRARIES: *** Required variable "SUNDIALS_LIB_IDA" set to
>> NOTFOUND ***
>> -- SUNDIALS_INCLUDE_DIRS: *** Required variable "SUNDIALS_INCLUDE_DIR"
>> set to NOTFOUND ***
>> -- SUNDIALS_USER_INCLUDE_DIRS: *** Required variable
>> "SUNDIALS_INCLUDE_DIR" set to NOTFOUND ***
>> -- Could NOT find SUNDIALS
>> -- DEAL_II_WITH_SUNDIALS has unmet external dependencies.
>> --
>> -- Include /home/Felipe/BIGSOFTWARE/
>> dealii-9.0.0/cmake/setup_cpack.cmake
>> --
>> -- Include
>> /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_custom_targets.cmake
>> --
>> -- Include
>> /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_finalize.cmake
>> -- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG
>> -- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG - Failed
>> CMake Error at cmake/setup_finalize.cmake:95 (MESSAGE):
>>
>>
>> Configuration error: Cannot compile a test program with the final set
>> of
>> compiler and linker flags:
>> CXX flags (DEBUG): -pedantic -fPIC -Wall -Wextra -Wpointer-arith
>> -Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Woverloaded-virtual
>> -Wno-deprecated-declarations -Wno-literal-suffix -std=c++11
>> -Wno-parentheses -Wno-unused-local-typedefs -Og -ggdb
>> -Wa,--compress-debug-sections
>> LD flags (DEBUG): -Wl,--as-needed -rdynamic -fuse-ld=gold pthread
>> -ggdb
>> LIBRARIES (DEBUG): m;dl;/usr/lib64/libz.so;rt;
>>
>> Call Stack (most recent call first):
>> cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
>> CMakeLists.txt:132 (VERBOSE_INCLUDE)
>>
>> -- Configuring incomplete, errors occurred!
>> See also
>> "/home/Felipe/BIGSOFTWARE/dealii-9.0.0/build/CMakeFiles/CMakeOutput.log".
>>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
> You received this message because you are subscribed to the Google Groups
> "deal.II User Group" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to [email protected].
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/dealii/61c0b52e-23b7-4387-bde1-1361d6f89494%40googlegroups.com
> <https://groups.google.com/d/msgid/dealii/61c0b52e-23b7-4387-bde1-1361d6f89494%40googlegroups.com?utm_medium=email&utm_source=footer>
> .
>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To view this discussion on the web visit
https://groups.google.com/d/msgid/dealii/CABP9zGUWFBLghRK%3DJJzmd_2zm319npWuxLopB5OowzaHHcZMyQ%40mail.gmail.com.
