Hi Timo,
Thank you for your suggestion. I repeated the installation process and
this time I didn't run the quick_tests. Rather I changed to examples/step-1
directory in the deal.ii installation and executed the following :
*cmake . *
*make *
which exited with the following error :
*Scanning dependencies of target step-1*
*[ 50%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o*
*[100%] Linking CXX executable step-1*
*/usr/bin/ld:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/libdeal_II.g.so:
file not recognized: file truncated*
*make[2]: *** [CMakeFiles/step-1.dir/build.make:95: step-1] Error 1*
*make[1]: *** [CMakeFiles/Makefile2:137: CMakeFiles/step-1.dir/all] Error 2*
*make: *** [Makefile:84: all] Error 2*
I am not sure why this is the case since installation completed without
issues. I have attached the files *detailed.log* and *make_output.txt*(output
from *make -j8 install* on the KNL compute node).
Best,
Aaditya
On Saturday, October 24, 2020 at 10:38:49 AM UTC-4 Timo Heister wrote:
> Running the tests seems to have triggered a rebuild of deal.iII. Can you
> try running some of the tutorial steps instead?
>
> On Fri, Oct 23, 2020, 17:05 Aaditya Lakshmanan <aadit...@gmail.com> wrote:
>
>> Hi Wolfgang,
>> I tried compiling, installing and running the deal.ii tests
>> interactively on a KNL compute node. Both compilation and installation were
>> seemingly successful but all the tests failed. I have attached the output
>> from make test in the file *test_output.txt*. An example error looks
>> like the following :
>> 2/11 Test #1: step.debug .......................***Failed 265.99 sec
>> gmake[6]: *** write jobserver: Invalid argument. Stop.
>> gmake[6]: *** Waiting for unfinished jobs....
>> gmake[6]: *** write jobserver: Invalid argument. Stop.
>> gmake[5]: *** [CMakeFiles/Makefile2:10829:
>> tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
>> gmake[4]: *** [Makefile:3700: step.debug.run] Error 2
>> Test step.debug: BUILD
>> =============================== OUTPUT BEGIN
>> ===============================
>> step.debug: BUILD failed. Output:
>> [ 0%] Built target obj_sundials_inst
>> [ 21%] Built target obj_physics_elasticity_inst
>> [ 30%] Built target obj_dofs_inst
>> [ 25%] Built target obj_matrix_free_inst
>> [ 23%] Built target obj_amd_global_debug
>> [ 34%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
>> [ 30%] Built target obj_differentiation_ad_inst
>> [ 34%] Built target obj_multigrid_inst
>> [ 59%] Built target obj_physics_inst
>> [ 59%] Built target obj_non_matching_inst
>> [ 59%] Built target obj_gmsh_inst
>> [ 34%] Built target obj_distributed_inst
>> [ 34%] Built target kill-step.debug-OK
>> [ 34%] Built target obj_muparser_debug
>> [ 34%] Built target obj_umfpack_DL_SOLVE_debug
>> [ 59%] Built target obj_numerics_inst
>> [ 59%] Built target obj_boost_system_debug
>> [ 59%] Built target obj_umfpack_DL_STORE_debug
>> [ 59%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
>> [ 59%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
>> [ 59%] Built target obj_umfpack_DI_TSOLVE_debug
>> [ 78%] Built target obj_base_inst
>> [ 78%] Built target obj_grid_inst
>> [ 59%] Built target obj_umfpack_DI_SOLVE_debug
>> [ 34%] Built target obj_amd_int_debug
>> [ 59%] Built target obj_algorithms_inst
>> [ 59%] Built target obj_meshworker_inst
>> [ 59%] Built target obj_hp_inst
>> [ 78%] Built target obj_particle_inst
>> [ 59%] Built target obj_differentiation_sd_inst
>> [ 59%] Built target obj_opencascade_inst
>> [ 78%] Built target obj_lac_inst
>> [ 59%] Built target obj_amd_long_debug
>> [ 59%] Built target obj_umfpack_DL_TSOLVE_debug
>> [ 59%] Built target obj_umfpack_DI_STORE_debug
>> [ 59%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
>> [ 59%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
>> [ 59%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
>> [ 59%] Built target obj_umfpack_GENERIC_debug
>> [ 78%] Built target obj_umfpack_DL_ASSEMBLE_debug
>> [ 59%] Built target obj_umfpack_DI_ASSEMBLE_debug
>> [ 84%] Built target obj_fe_inst
>>
>>
>> step.debug: ****** BUILD failed *******
>>
>> =============================== OUTPUT END
>> ===============================
>> Expected stage PASSED - aborting
>> CMake Error at
>> /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140
>>
>> (MESSAGE):
>> *** abort
>>
>>
>> Best,
>> Aaditya
>>
>> On Friday, October 23, 2020 at 2:00:00 AM UTC-4 Aaditya Lakshmanan wrote:
>>
>>> Hi Wolfgang,
>>> Thanks for your suggestion. I just checked that the Cori login nodes
>>> are Haswell processors while the compute nodes on which I wish to run
>>> simulations eventually are KNL processors(certain modules are also with
>>> that intention). I will use idev to access the compute nodes interactively
>>> and try the build, installation and testing phases again.
>>>
>>> Best,
>>> Aaditya
>>>
>>> On Thursday, October 22, 2020 at 11:29:38 PM UTC-4 Wolfgang Bangerth
>>> wrote:
>>>
>>>>
>>>> Aaditya,
>>>> is NERSC Cori a machine where the front-end node runs a different
>>>> processor/system than the compute nodes? If so, you're building a
>>>> library for
>>>> the compute nodes, and the tests are also built for the compute nodes.
>>>> But
>>>> you're trying to run the test executables on the front-end node --
>>>> which might
>>>> help explain the error you see.
>>>>
>>>> Best
>>>> W.
>>>>
>>>>
>>>> On 10/22/20 7:52 PM, Aaditya Lakshmanan wrote:
>>>> > Hi Everyone,
>>>> > I have been trying to install deal.ii on the NERSC Cori System and
>>>> after a
>>>> > seemingly successful cmake and make install, make test yields failure
>>>> for all
>>>> > the tests setup. I briefly detail the procedure I followed and the
>>>> outputs and
>>>> > errors obtained.
>>>> >
>>>> > As a pre-requisite I installed p4est using the setup script(with some
>>>> > modifications) and petsc manually with the configure.py script and
>>>> appropriate
>>>> > settings. The following modules were loaded :
>>>> >
>>>> > Currently Loaded Modulefiles:
>>>> > 1) modules/3.2.11.4 5) craype-network-aries
>>>> 9)
>>>> > PrgEnv-intel/6.0.5 13) valgrind/3.15.0
>>>> > 2) altd/2.0 6) craype/2.6.2
>>>> 10)
>>>> > craype-mic-knl 14) zlib/1.2.11
>>>> > 3) darshan/3.1.7 7) pmi/5.0.14
>>>> 11)
>>>> > cray-mpich/7.7.14 15) cmake/3.14.4
>>>> > 4) intel/19.0.3.199 8) atp/2.1.3
>>>> 12)
>>>> > craype-hugepages2M 16) cray-hdf5-parallel/1.10.5.2
>>>> >
>>>> >
>>>> > After setting the environment variables P4EST_DIR, PETSC_DIR and
>>>> PETSC_ARCH, I
>>>> > compiled dealii-9.1.1 as follows :
>>>> >
>>>> > *cmake -DCMAKE_SYSTEM_NAME=CrayLinuxEnvironment -DCMAKE_C_COMPILER=cc
>>>> > -DCMAKE_CXX_COMPILER=CC -DCMAKE_Fortran_COMPILER=ftn
>>>> -DDEAL_II_WITH_MPI=ON
>>>> > -DDEAL_II_WITH_PETSC=ON -DDEAL_II_WITH_P4EST=ON
>>>> -DDEAL_II_WITH_LAPACK=ON
>>>> > -DCMAKE_INSTALL_PREFIX=$CPFE_PACKAGES/dealii_install ../dealii
>>>> > *
>>>> >
>>>> > which ran successfully. I have attached the file *detailed.log*. Then
>>>> > installing via
>>>> >
>>>> > *make -j8 install *
>>>> >
>>>> > ran without issues. I have attached the output from the above command
>>>> in the
>>>> > file *make_output.txt*. Then running the tests as
>>>> >
>>>> > *make -j4 test *
>>>> > *
>>>> > *
>>>> > reports failure for all the tests. I have attached the entire output
>>>> from the
>>>> > above command in the file test_output.txt and an example error below
>>>> :
>>>> >
>>>> > 2/11 Test #2: step.release .....................***Failed 0.69
>>>> sec
>>>> > gmake[6]: *** read jobs pipe: Bad file descriptor. Stop.
>>>> > gmake[6]: *** Waiting for unfinished jobs....
>>>> > gmake[5]: *** [CMakeFiles/Makefile2:10861:
>>>> > tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 2
>>>> > gmake[4]: *** [Makefile:3713: step.release.run] Error 2
>>>> > Test step.release: BUILD
>>>> > =============================== OUTPUT BEGIN
>>>> ===============================
>>>> > step.release: BUILD failed. Output:
>>>> > [ 1%] Built target obj_boost_iostreams_release
>>>> >
>>>> >
>>>> > step.release: ****** BUILD failed *******
>>>> >
>>>> > =============================== OUTPUT END
>>>> ===============================
>>>> > Expected stage PASSED - aborting
>>>> > CMake Error at
>>>> >
>>>> /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140
>>>>
>>>>
>>>> > (MESSAGE):
>>>> > *** abort
>>>> >
>>>> > I am unable to understand what the issue might. Any insight on this
>>>> will be
>>>> > appreciated. Thank you.
>>>> >
>>>> > Best,
>>>> > Aaditya
>>>> >
>>>> > --
>>>> > The deal.II project is located at http://www.dealii.org/
>>>> > <
>>>> https://nam01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.dealii.org%2F&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7C67682f15035d469a23df08d876f649b8%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637390147477029066%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=snjl%2Fkw1PYq4xwYh0SGB03l6XvsgS8%2FfWr5sdHO4aI0%3D&reserved=0>
>>>>
>>>>
>>>> > For mailing list/forum options, see
>>>> > https://groups.google.com/d/forum/dealii?hl=en
>>>> > <
>>>> https://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fforum%2Fdealii%3Fhl%3Den&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7C67682f15035d469a23df08d876f649b8%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637390147477039065%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=QD7qw6euanb6yVAY0KMhGpNc0%2B0APSrikkenzbG4wGU%3D&reserved=0>
>>>>
>>>>
>>>> > ---
>>>> > You received this message because you are subscribed to the Google
>>>> Groups
>>>> > "deal.II User Group" group.
>>>> > To unsubscribe from this group and stop receiving emails from it,
>>>> send an
>>>> > email to dealii+un...@googlegroups.com
>>>> > <mailto:dealii+un...@googlegroups.com>.
>>>> > To view this discussion on the web visit
>>>> >
>>>> https://groups.google.com/d/msgid/dealii/ec2fe941-4ba0-498f-8a9f-009b48022977n%40googlegroups.com
>>>>
>>>> > <
>>>> https://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fmsgid%2Fdealii%2Fec2fe941-4ba0-498f-8a9f-009b48022977n%2540googlegroups.com%3Futm_medium%3Demail%26utm_source%3Dfooter&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7C67682f15035d469a23df08d876f649b8%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637390147477039065%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=bEIaI%2BRLikBbmu8bt%2BL3QzA%2B%2Fs4nJLVFa%2BIfKLlVblE%3D&reserved=0>.
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> ------------------------------------------------------------------------
>>>>
>>>> Wolfgang Bangerth email: bang...@colostate.edu
>>>> www: http://www.math.colostate.edu/~bangerth/
>>>>
>>>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
>> ---
>> You received this message because you are subscribed to the Google Groups
>> "deal.II User Group" group.
>>
> To unsubscribe from this group and stop receiving emails from it, send an
>> email to dealii+un...@googlegroups.com.
>> To view this discussion on the web visit
>> https://groups.google.com/d/msgid/dealii/b8878835-5d8a-4c18-92d8-dce463e0a4d8n%40googlegroups.com
>>
>> <https://groups.google.com/d/msgid/dealii/b8878835-5d8a-4c18-92d8-dce463e0a4d8n%40googlegroups.com?utm_medium=email&utm_source=footer>
>> .
>>
>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to dealii+unsubscr...@googlegroups.com.
To view this discussion on the web visit
https://groups.google.com/d/msgid/dealii/47863d36-7573-43e8-9acb-af33ce0880b7n%40googlegroups.com.
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install
# CMAKE_SOURCE_DIR:
/global/project/projectdirs/m2360/packagesCPFE/dealii
# (version 9.1.1, shortrev 777cf92a41)
# CMAKE_BINARY_DIR:
/global/project/projectdirs/m2360/packagesCPFE/build
# CMAKE_CXX_COMPILER: Intel 19.0.0.20190206 on platform
CrayLinuxEnvironment x86_64
# /opt/cray/pe/craype/2.6.2/bin/CC
# CMAKE_C_COMPILER: /opt/cray/pe/craype/2.6.2/bin/cc
# CMAKE_Fortran_COMPILER: /opt/cray/pe/craype/2.6.2/bin/ftn
# CMAKE_GENERATOR: Unix Makefiles
#
# CROSSCOMPILING!
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -fpic -ansi -w2 -diag-disable=remark
-wd21 -wd68 -wd135 -wd175 -wd177 -wd191 -wd193 -wd279 -wd327 -wd383 -wd981
-wd1418 -wd1478 -wd1572 -wd2259 -wd2536 -wd2651 -wd3415 -wd15531 -wd111 -wd128
-wd185 -wd186 -wd280 -std=c++17
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -no-ansi-alias -ip -funroll-loops
# DEAL_II_CXX_FLAGS_DEBUG: -O0 -g -gdwarf-2 -grecord-gcc-switches
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -shared-intel -rdynamic
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG:
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES:
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
# DEAL_II_COMPILER_VECTORIZATION_LEVEL: 0
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ADOLC = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# ( DEAL_II_WITH_ASSIMP = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# BOOST_BUNDLED_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/dealii/bundled/boost-1.62.0/include
# BOOST_LIBRARIES = rt
# DEAL_II_WITH_COMPLEX_VALUES = ON
# ( DEAL_II_WITH_CUDA = OFF )
# DEAL_II_WITH_CXX14 = ON
# DEAL_II_WITH_CXX17 = ON
# ( DEAL_II_WITH_GINKGO = OFF )
# ( DEAL_II_WITH_GMSH = OFF )
# ( DEAL_II_WITH_GSL = OFF )
# DEAL_II_WITH_HDF5 set up with external dependencies
# HDF5_DIR = /opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0
# HDF5_INCLUDE_DIRS =
/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/include
# HDF5_USER_INCLUDE_DIRS =
/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/include
# HDF5_LIBRARIES =
/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/lib/libhdf5_hl.so;/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/lib/libhdf5.so
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_WITH_64BIT_BLAS_INDICES = OFF
# LAPACK_LINKER_FLAGS =
# LAPACK_INCLUDE_DIRS =
# LAPACK_USER_INCLUDE_DIRS =
# LAPACK_LIBRARIES =
/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_intel_lp64.so;/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_intel_thread.so;/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_core.so;/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/libiomp5.so;-lm;-ldl;hugetlbfs;AtpSigHandler;AtpSigHCommData;z;hdf5_hl_parallel;hdf5_parallel;hdf5hl_fortran_parallel;hdf5_fortran_parallel;mpich_intel;mpichf90_intel;ifport;ifcoremt;imf;m;ipgo;irc;pthread;svml;gcc;gcc_s;irc_s;dl;c
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 3.1
# MPI_C_COMPILER = /opt/cray/pe/craype/2.6.2/bin/cc
# MPI_CXX_COMPILER = /opt/cray/pe/craype/2.6.2/bin/CC
# MPI_Fortran_COMPILER = /opt/cray/pe/craype/2.6.2/bin/ftn
# MPI_CXX_FLAGS =
# MPI_LINKER_FLAGS =
# MPI_INCLUDE_DIRS =
# MPI_USER_INCLUDE_DIRS =
# MPI_LIBRARIES =
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/dealii/bundled/muparser_v2_2_4//include
# ( DEAL_II_WITH_NANOFLANN = OFF )
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# P4EST_VERSION = 2.2
# P4EST_DIR =
/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial
# P4EST_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial/FAST/include
# P4EST_USER_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial/FAST/include
# P4EST_LIBRARIES =
optimized;/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial/FAST/lib/libp4est.a;/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial/FAST/lib/libsc.a;debug;/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial/DEBUG/lib/libp4est.a;/global/project/projectdirs/m2360/packagesCPFE/p4est_install_trial/DEBUG/lib/libsc.a;general;/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_intel_lp64.so;/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_intel_thread.so;/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_core.so;/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/libiomp5.so;-lm;-ldl;hugetlbfs;AtpSigHandler;AtpSigHCommData;z;hdf5_hl_parallel;hdf5_parallel;hdf5hl_fortran_parallel;hdf5_fortran_parallel;mpich_intel;mpichf90_intel;ifport;ifcoremt;imf;m;ipgo;irc;pthread;svml;gcc;gcc_s;irc_s;dl;c
# DEAL_II_WITH_PETSC set up with external dependencies
# PETSC_VERSION = 3.12.1.0
# PETSC_DIR =
/global/project/projectdirs/m2360/packagesCPFE/petsc-3.12.1
# PETSC_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/petsc-3.12.1/include;/global/project/projectdirs/m2360/packagesCPFE/petsc-3.12.1/arch-linux2-c-debug/include
# PETSC_USER_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/petsc-3.12.1/include;/global/project/projectdirs/m2360/packagesCPFE/petsc-3.12.1/arch-linux2-c-debug/include
# PETSC_LIBRARIES =
/global/project/projectdirs/m2360/packagesCPFE/petsc-3.12.1/arch-linux2-c-debug/lib/libpetsc.so;dl
# ( DEAL_II_WITH_SCALAPACK = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# ( DEAL_II_WITH_SUNDIALS = OFF )
# ( DEAL_II_WITH_SYMENGINE = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# TBB_VERSION = bundled
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/dealii/bundled/tbb-2018_U2/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with bundled packages
# UMFPACK_BUNDLED_INCLUDE_DIRS =
/global/project/projectdirs/m2360/packagesCPFE/dealii/bundled/umfpack/UMFPACK/Include;/global/project/projectdirs/m2360/packagesCPFE/dealii/bundled/umfpack/AMD/Include
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.11
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib64/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )
#
###
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target doxygen_headers
[ 0%] Built target obj_boost_system_debug
[ 0%] Built target obj_boost_system_release
[ 0%] Built target obj_umfpack_GENERIC_release
[ 0%] Built target obj_umfpack_GENERIC_debug
[ 2%] Built target obj_umfpack_DL_SOLVE_release
[ 3%] Built target obj_umfpack_DL_SOLVE_debug
[ 3%] Built target obj_tbb_debug
[ 4%] Built target obj_tbb_release
[ 4%] Built target obj_umfpack_DL_ASSEMBLE_release
[ 4%] Built target obj_umfpack_DL_STORE_debug
[ 4%] Built target obj_umfpack_DL_STORE_release
[ 4%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_release
[ 4%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_release
[ 4%] Built target obj_umfpack_DL_TRIPLET_MAP_X_debug
[ 4%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX_debug
[ 4%] Built target obj_umfpack_DL_TRIPLET_MAP_X_release
[ 4%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X_debug
[ 4%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_debug
[ 4%] Built target obj_umfpack_DI_TSOLVE_release
[ 4%] Built target obj_umfpack_DI_TSOLVE_debug
[ 4%] Built target obj_umfpack_DI_ASSEMBLE_debug
[ 6%] Built target obj_umfpack_L_UMFPACK_debug
[ 7%] Built target obj_boost_iostreams_release
[ 8%] Built target obj_boost_iostreams_debug
[ 10%] Built target obj_umfpack_DI_TRIPLET_MAP_X_release
[ 10%] Built target obj_umfpack_I_UMFPACK_debug
[ 11%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_debug
[ 12%] Built target obj_umfpack_I_UMFPACK_release
[ 13%] Built target obj_umfpack_DL_TSOLVE_release
[ 13%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX_release
[ 13%] Built target obj_umfpack_DL_TSOLVE_debug
[ 13%] Built target obj_umfpack_DI_TRIPLET_MAP_X_debug
[ 13%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X_release
[ 13%] Built target obj_umfpack_DI_STORE_debug
[ 14%] Built target obj_umfpack_DI_STORE_release
[ 14%] Built target obj_umfpack_DL_ASSEMBLE_debug
[ 15%] Built target obj_umfpack_DI_SOLVE_debug
[ 15%] Built target obj_umfpack_DI_ASSEMBLE_release
[ 16%] Built target obj_umfpack_DI_SOLVE_release
[ 21%] Built target obj_umfpack_L_UMF_debug
[ 22%] Built target obj_umfpack_I_UMF_release
[ 24%] Built target obj_umfpack_L_UMFPACK_release
[ 27%] Built target obj_umfpack_I_UMF_debug
[ 27%] Built target obj_amd_global_debug
[ 28%] Built target obj_amd_int_debug
[ 33%] Built target obj_umfpack_L_UMF_release
[ 33%] Built target obj_amd_long_release
[ 33%] Built target obj_amd_global_release
[ 34%] Built target obj_amd_int_release
[ 34%] Built target obj_sundials_inst
[ 35%] Built target obj_amd_long_debug
[ 35%] Built target obj_muparser_debug
[ 36%] Built target obj_muparser_release
[ 38%] Built target obj_lac_inst
[ 41%] Built target obj_dofs_inst
[ 41%] Built target obj_boost_serialization_debug
[ 43%] Built target obj_boost_serialization_release
[ 43%] Built target obj_gmsh_inst
[ 44%] Built target obj_base_inst
[ 46%] Built target obj_numerics_inst
[ 46%] Built target obj_algorithms_inst
[ 47%] Built target obj_multigrid_inst
[ 47%] Built target obj_hp_inst
[ 50%] Built target obj_matrix_free_inst
[ 51%] Built target obj_grid_inst
[ 52%] Built target obj_fe_inst
[ 53%] Built target obj_particle_inst
[ 53%] Built target obj_meshworker_inst
[ 53%] Built target obj_opencascade_inst
[ 53%] Built target obj_distributed_inst
[ 53%] Built target obj_physics_inst
[ 53%] Built target obj_differentiation_sd_inst
[ 53%] Built target obj_physics_elasticity_inst
[ 53%] Built target obj_non_matching_inst
[ 54%] Built target obj_differentiation_ad_inst
[ 54%] Built target obj_gmsh_release
[ 54%] Built target obj_sundials_release
[ 54%] Built target obj_hp_release
[ 55%] Built target obj_multigrid_release
[ 56%] Built target obj_grid_release
[ 57%] Built target obj_dofs_release
[ 61%] Built target obj_lac_release
[ 61%] Built target obj_algorithms_release
[ 62%] Built target obj_distributed_release
[ 62%] Built target obj_matrix_free_release
[ 62%] Built target obj_opencascade_release
[ 63%] Built target obj_meshworker_release
[ 63%] Built target obj_differentiation_ad_release
[ 63%] Built target obj_physics_elasticity_release
[ 64%] Built target obj_differentiation_sd_release
[ 64%] Built target obj_physics_release
[ 64%] Built target obj_integrators_debug
[ 64%] Built target obj_particle_release
[ 64%] Built target obj_rol_inst
[ 64%] Built target obj_integrators_release
[ 66%] Built target obj_numerics_release
[ 66%] Built target obj_non_matching_release
[ 71%] Built target obj_fe_release
[ 71%] Built target obj_sundials_debug
[ 71%] Built target obj_gmsh_debug
[ 72%] Built target obj_dofs_debug
[ 76%] Built target obj_grid_debug
[ 78%] Built target obj_hp_debug
[ 78%] Built target obj_lac_debug
[ 78%] Built target obj_multigrid_debug
[ 78%] Built target obj_algorithms_debug
[ 80%] Built target obj_matrix_free_debug
[ 83%] Built target obj_numerics_debug
[ 84%] Built target obj_distributed_debug
[ 84%] Built target obj_meshworker_debug
[ 84%] Built target obj_differentiation_ad_debug
[ 85%] Built target obj_opencascade_debug
[ 85%] Built target obj_physics_debug
[ 86%] Built target obj_differentiation_sd_debug
[ 86%] Built target obj_particle_debug
[ 86%] Built target obj_rol_debug
[ 86%] Built target obj_physics_elasticity_debug
[ 90%] Built target obj_rol_release
[ 91%] Built target obj_base_debug
[ 91%] Built target obj_non_matching_debug
[ 95%] Built target obj_base_release
[ 95%] Built target deal_II
[100%] Built target obj_fe_debug
[100%] Built target deal_II.g
Install the project...
-- Install configuration: "DebugRelease"
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/include/deal.II/base/config.h
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/include/deal.II/base/revision.h
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/./summary.log
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/./detailed.log
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/libdeal_II.g.so
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/libdeal_II.so
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/cmake/deal.II/deal.IITargets.cmake
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/cmake/deal.II/deal.IITargets-debugrelease.cmake
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/cmake/deal.II/deal.IIConfig.cmake
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/cmake/deal.II/deal.IIConfigVersion.cmake
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/cmake/deal.II/deal.IIFeatureConfig.cmake
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/pkgconfig/deal.II_debug.pc
-- Installing:
/global/project/projectdirs/m2360/packagesCPFE/dealii_install/lib/pkgconfig/deal.II_release.pc
