My apologize to my ignorance. I did not realize that we have pre-existing dealii modules on Stampede2 so I tired to install it manually. I am happy with using it directly.
Thanks for your prompt response! Jau-Uei Chen [email protected] 在 2020年11月23日 星期一上午10:56:57 [UTC-6] 的信中寫道： > Hi, > There are pre-existing deal.ii modules on Stampede2 about which you > can find out by using the *module spider* command : > > *module spider dealii* > > Output : > > > --------------------------------------------------------------------------------------------------------------------------------------------------------- > dealii: > > --------------------------------------------------------------------------------------------------------------------------------------------------------- > Description: > Portable Extendible Toolkit for Scientific Computing, Numerical > library for sparse linear algebra > > Versions: > dealii/git20170615 > dealii/9.0.0 > dealii/9.1.1 > dealii/9.2.0 > > > --------------------------------------------------------------------------------------------------------------------------------------------------------- > For detailed information about a specific "dealii" package (including > how to load the modules) use the module's full name. > Note that names that have a trailing (E) are extensions provided by > other modules. > For example: > > $ module spider dealii/9.2.0 > > --------------------------------------------------------------------------------------------------------------------------------------------------------- > > Is there a specific reason you want to install it manually? > > Best, > Aaditya > > On Monday, November 23, 2020 at 11:28:23 AM UTC-5 [email protected] wrote: > >> Dear dealii community, >> >> I am trying to install dealii v9.2.0 with candi on stampede2 by following >> instruction shown in here >> <https://github.com/geodynamics/aspect/wiki/Compiling-and-Running-ASPECT-on-TACC-Stampede2>. >> >> I encounter errors when installing dealii and trilinos. >> >> My modules are: >> 1) git/2.24.1 3) xalt/2.8 5) gcc/7.1.0 7) python/2.7.13 9) >> autotools/1.1 >> 2) cmake/3.16.1 4) TACC 6) impi/17.0.3 8) mkl/17.0.4 >> >> By using the latest version of candi, I only change DEAL_CONFOPTS to >> DEAL_CONFOPTS="-D DEAL_II_FORCE_BUNDLED_THREADS=ON" >> >> and MKL setting to: >> MKL=ON >> MKL_DIR=$MKLROOT/lib/intel64 >> >> However, I got an error when installing trilinos: >> CMake Error at >> cmake/tribits/core/package_arch/TribitsAdjustPackageEnables.cmake:1098 >> (MESSAGE): >> *** >> *** ERROR: Setting Trilinos_ENABLE_Amesos2=OFF which was 'ON' because >> Amesos2 has a required library dependence on disabled package Tpetra! >> *** >> >> It seems that it happened when installing trilinos with MKL (see here >> <https://community.geodynamics.org/t/trilinos-installation-with-candi-and-mkl-fails/1294/7>) >> >> though it seems to be resolved. I noted that in the post they use "intel" >> however, to use MKL, I have to use gcc in stampede2. I also tried to >> install the older version of trilinos (v12-10-1) by slightly modifying >> "trilinos.package" but it did not work neither. >> >> Out of curiosity, I skip trilinos and install the rest of packages >> including dealii. However, I got an error when installing dealii: >> -- A library with LAPACK API found. >> -- Performing Test mpifort_LIBRARY >> -- Performing Test mpifort_LIBRARY - Success >> -- Performing Test mpi_LIBRARY >> -- Performing Test mpi_LIBRARY - Success >> -- Performing Test mpigi_LIBRARY >> -- Performing Test mpigi_LIBRARY - Success >> -- Performing Test dl_LIBRARY >> -- Performing Test dl_LIBRARY - Success >> -- Performing Test pthread_LIBRARY >> -- Performing Test pthread_LIBRARY - Success >> -- Performing Test gfortran_LIBRARY >> -- Performing Test gfortran_LIBRARY - Success >> -- Performing Test m_LIBRARY >> -- Performing Test m_LIBRARY - Success >> -- Performing Test gcc_s_LIBRARY >> -- Performing Test gcc_s_LIBRARY - Success >> -- Performing Test gcc_LIBRARY >> -- Performing Test gcc_LIBRARY - Success >> -- Performing Test quadmath_LIBRARY >> -- Performing Test quadmath_LIBRARY - Success >> -- Performing Test c_LIBRARY >> -- Performing Test c_LIBRARY - Success >> -- LAPACK_LIBRARIES: *** Required variable "_lapack_libraries" empty *** >> -- LAPACK_LINKER_FLAGS: >> -- LAPACK_INCLUDE_DIRS: >> -- LAPACK_USER_INCLUDE_DIRS: >> -- Could NOT find LAPACK >> -- DEAL_II_WITH_LAPACK has unmet external dependencies. >> CMake Error at cmake/macros/macro_configure_feature.cmake:112 (MESSAGE): >> >> >> Could not find the lapack library! >> >> Please ensure that a suitable lapack library is installed on your >> computer. >> >> If the library is not at a default location, either provide some hints >> for >> autodetection, >> >> $ LAPACK_DIR="..." cmake <...> >> $ cmake -DLAPACK_DIR="..." <...> >> >> or set the relevant variables by hand in ccmake. >> >> It seems also happened before (see here >> <https://github.com/dealii/dealii/issues/7373> and here >> <https://groups.google.com/u/1/g/dealii/c/Ui7cvZOO22E>). I tried >> different setting in MKL and DEAL_CONFOPTS that are mentioned in the posts >> but none of them work for me. (To link Lapack in stampede2, I referent to >> here <https://portal.tacc.utexas.edu/tutorials/blaslapack>.) >> i.e. >> >> - >> >> DEAL_CONFOPTS="-DLAPACK_DIR=${TACC_MKL_DIR}/lib/intel64_lin/libmkl_intel_lp64.so;${TACC_MKL_DIR}/lib/intel64_lin/libmkl_core.so" >> >> - DEAL_CONFOPTS="-DLAPACK_DIR=${TACC_MKL_DIR}" >> >> or in MKL section >> >> - >> - LAPACK_DIR=${TACC_MKL_LIB} >> - >> >> LAPACK_LIBRARIES="${TACC_MKL_DIR}/lib/intel64_lin/libmkl_intel_lp64.so;${TACC_MKL_DIR}/lib/intel64_lin/libmkl_core.so" >> - >> >> DLAPACK_LIBRARIES="${TACC_MKL_DIR}/lib/intel64_lin/libmkl_intel_lp64.so;${TACC_MKL_DIR}/lib/intel64_lin/libmkl_core.so" >> >> >> Any suggestion or comment will be greatly appreciated! >> Best, >> Jau-Uei Chen >> >> >> >> -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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