Dear deal.II community,
I am installing deal.II 9.0.0 as I wish to run PRIMS-PF on it wherein
during the process I ran into certain issues as :
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28,
from
/home/pushkar/dealii-9.0.0/source/dofs/dof_accessor_get.cc:21:
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12:
fatal error: petscvec.h: No such file or directory
32 | # include <petscvec.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [source/dofs/CMakeFiles/obj_dofs_debug.dir/build.make:160:
source/dofs/CMakeFiles/obj_dofs_debug.dir/dof_accessor_get.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3588:
source/dofs/CMakeFiles/obj_dofs_debug.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 48%] Building CXX object
source/base/CMakeFiles/obj_base_debug.dir/multithread_info.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28,
from
/home/pushkar/dealii-9.0.0/source/algorithms/operator.cc:30:
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12:
fatal error: petscvec.h: No such file or directory
32 | # include <petscvec.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: ***
[source/algorithms/CMakeFiles/obj_algorithms_debug.dir/build.make:82:
source/algorithms/CMakeFiles/obj_algorithms_debug.dir/operator.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:4209:
source/algorithms/CMakeFiles/obj_algorithms_debug.dir/all] Error 2
[ 48%] Building CXX object
source/base/CMakeFiles/obj_base_debug.dir/named_selection.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28,
from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_block_vector.h:24,
from
/home/pushkar/dealii-9.0.0/source/multigrid/mg_base.cc:21:
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12:
fatal error: petscvec.h: No such file or directory
32 | # include <petscvec.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: ***
[source/multigrid/CMakeFiles/obj_multigrid_debug.dir/build.make:82:
source/multigrid/CMakeFiles/obj_multigrid_debug.dir/mg_base.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:4047:
source/multigrid/CMakeFiles/obj_multigrid_debug.dir/all] Error 2
[ 48%] Building CXX object
source/distributed/CMakeFiles/obj_distributed_debug.dir/solution_transfer.cc.o
/home/pushkar/dealii-9.0.0/source/base/mpi.cc:38:12: fatal error:
petscsys.h: No such file or directory
38 | # include <petscsys.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [source/base/CMakeFiles/obj_base_debug.dir/build.make:368:
source/base/CMakeFiles/obj_base_debug.dir/mpi.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 48%] Building CXX object
source/distributed/CMakeFiles/obj_distributed_debug.dir/tria.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28,
from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_block_vector.h:24,
from
/home/pushkar/dealii-9.0.0/source/lac/block_matrix_array.cc:23:
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12:
fatal error: petscvec.h: No such file or directory
32 | # include <petscvec.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [source/lac/CMakeFiles/obj_lac_debug.dir/build.make:82:
source/lac/CMakeFiles/obj_lac_debug.dir/block_matrix_array.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3615:
source/lac/CMakeFiles/obj_lac_debug.dir/all] Error 2
[ 48%] Building CXX object
source/distributed/CMakeFiles/obj_distributed_debug.dir/tria_base.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/hp/fe_values.h:24,
from
/home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out_dof_data.h:30,
from
/home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out.h:22,
from
/home/pushkar/dealii-9.0.0/source/numerics/data_out.cc:17:
/home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal
error: petsc.h: No such file or directory
48 | # include <petsc.h>
| ^~~~~~~~~
compilation terminated.
make[2]: ***
[source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:82:
source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3399:
source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Error 2
[ 48%] Building CXX object
source/distributed/CMakeFiles/obj_distributed_debug.dir/shared_tria.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28,
from
/home/pushkar/dealii-9.0.0/source/distributed/solution_transfer.cc:25:
/home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_vector_base.h:32:12:
fatal error: petscvec.h: No such file or directory
32 | # include <petscvec.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: ***
[source/distributed/CMakeFiles/obj_distributed_debug.dir/build.make:95:
source/distributed/CMakeFiles/obj_distributed_debug.dir/solution_transfer.cc.o]
Error 1
make[2]: *** Waiting for unfinished jobs....
[ 50%] Building CXX object
source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/mapping_info.cc.o
In file included from /home/pushkar/dealii-9.0.0/source/fe/fe_abf.cc:28:
/home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal
error: petsc.h: No such file or directory
48 | # include <petsc.h>
| ^~~~~~~~~
compilation terminated.
make[2]: *** [source/fe/CMakeFiles/obj_fe_debug.dir/build.make:108:
source/fe/CMakeFiles/obj_fe_debug.dir/fe_abf.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3480:
source/fe/CMakeFiles/obj_fe_debug.dir/all] Error 2
[ 50%] Building CXX object
source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/matrix_free.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/matrix_free/mapping_info.templates.h:24,
from
/home/pushkar/dealii-9.0.0/source/matrix_free/mapping_info.cc:17:
/home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal
error: petsc.h: No such file or directory
48 | # include <petsc.h>
| ^~~~~~~~~
compilation terminated.
make[2]: ***
[source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/build.make:95:
source/matrix_free/CMakeFiles/obj_matrix_free_debug.dir/mapping_info.cc.o]
Error 1
make[2]: *** Waiting for unfinished jobs....
[ 50%] Building CXX object
source/grid/CMakeFiles/obj_grid_debug.dir/grid_generator.cc.o
[ 50%] Building CXX object
source/grid/CMakeFiles/obj_grid_debug.dir/grid_in.cc.o
make[1]: *** [CMakeFiles/Makefile2:3696:
source/base/CMakeFiles/obj_base_debug.dir/all] Error 2
[ 50%] Building CXX object
source/grid/CMakeFiles/obj_grid_debug.dir/grid_out.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/hp/fe_values.h:24,
from
/home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out_dof_data.h:30,
from
/home/pushkar/dealii-9.0.0/include/deal.II/numerics/data_out.h:22,
from /home/pushkar/dealii-9.0.0/source/grid/grid_out.cc:27:
/home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal
error: petsc.h: No such file or directory
48 | # include <petsc.h>
| ^~~~~~~~~
compilation terminated.
make[2]: *** [source/grid/CMakeFiles/obj_grid_debug.dir/build.make:121:
source/grid/CMakeFiles/obj_grid_debug.dir/grid_out.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 50%] Building CXX object
source/hp/CMakeFiles/obj_hp_debug.dir/dof_level.cc.o
[ 50%] Building CXX object
source/hp/CMakeFiles/obj_hp_debug.dir/fe_collection.cc.o
[ 50%] Built target obj_gmsh_debug
[ 50%] Building CXX object
source/hp/CMakeFiles/obj_hp_debug.dir/fe_values.cc.o
[ 51%] Building CXX object
source/hp/CMakeFiles/obj_hp_debug.dir/mapping_collection.cc.o
[ 51%] Building CXX object
source/hp/CMakeFiles/obj_hp_debug.dir/dof_handler.cc.o
In file included from
/home/pushkar/dealii-9.0.0/include/deal.II/hp/fe_values.h:24,
from /home/pushkar/dealii-9.0.0/source/hp/fe_values.cc:16:
/home/pushkar/dealii-9.0.0/include/deal.II/fe/fe_values.h:48:12: fatal
error: petsc.h: No such file or directory
48 | # include <petsc.h>
| ^~~~~~~~~
compilation terminated.
The above out isnt the complete output but only the eror part in the
output and I eventually ended with make error . Moreover,I have compiled
deal.II with Trilinos ,Petsc ,p4est,cuda and mpi flags "on". Any header in
this regard is appreciated .
Regards
Pushkar
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