Hello again,
The problem is when I type 'apt-cache search hdf5' I get 103 packages (attached to this e-mail) in Ubuntu related to hdf5. Which ones do I have to select? I've selected these four packages: hdf5-helpers libhdf5-103 libhdf5-cpp-103 libhdf5-dev with the same result: -- Include /home/curro/dealii-9.2.0/cmake/configure/configure_hdf5.cmake -- HDF5_INCLUDE_DIR not found! Call: -- FIND_PATH(HDF5_INCLUDE_DIR hdf5.h HINTS /usr/lib/x86_64-linux-gnu/hdf5 PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include) -- HDF5_LIBRARY not found! Call: -- FIND_LIBRARY(HDF5_LIBRARY NAMES hdf5 HINTS /usr/lib/x86_64-linux-gnu/hdf5 PATH_SUFFIXES hdf5/lib lib lib64 lib) -- HDF5_HL_LIBRARY not found! Call: -- FIND_LIBRARY(HDF5_HL_LIBRARY NAMES hdf5_hl HINTS /usr/lib/x86_64-linux-gnu/hdf5 PATH_SUFFIXES lib lib64 lib) -- HDF5_PUBCONF not found! Call: -- FIND_FILE(HDF5_PUBCONF NAMES H5pubconf.h H5pubconf-64.h HINTS HDF5_INCLUDE_DIR-NOTFOUND /usr/lib/x86_64-linux-gnu/hdf5 PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include) -- HDF5_LIBRARIES: *** Required variable "HDF5_HL_LIBRARY" set to NOTFOUND *** -- HDF5_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to NOTFOUND *** -- HDF5_USER_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to NOTFOUND *** -- Could NOT find HDF5 -- DEAL_II_WITH_HDF5 has unmet external dependencies. Any suggestion? Thank you! De: [email protected] <[email protected]> En nombre de Curro Trigo Enviado el: domingo, 21 de marzo de 2021 13:42 Para: deal.II User Group <[email protected]> Asunto: [deal.II] Installing 9.2.0 with HDF5 Hello: I'm trying to install deal II 9.2.0 on Ubuntu 20.04.2 LTS realease. And I succeded. But if I try to install it with HDF5 activated I get errors like those shown below in the cmake process (while executing 'cmake -DDEAL_II_DIR=/home/curro/dealii-9.2.0/ ../'): -- Include /home/curro/dealii-9.2.0/cmake/configure/configure_hdf5.cmake -- HDF5_INCLUDE_DIR not found! Call: -- FIND_PATH(HDF5_INCLUDE_DIR hdf5.h HINTS PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include) -- HDF5_LIBRARY not found! Call: -- FIND_LIBRARY(HDF5_LIBRARY NAMES hdf5 HINTS PATH_SUFFIXES hdf5/lib lib lib64 lib) -- HDF5_HL_LIBRARY not found! Call: -- FIND_LIBRARY(HDF5_HL_LIBRARY NAMES hdf5_hl HINTS PATH_SUFFIXES lib lib64 lib) -- HDF5_PUBCONF not found! Call: -- FIND_FILE(HDF5_PUBCONF NAMES H5pubconf.h H5pubconf-64.h HINTS HDF5_INCLUDE_DIR-NOTFOUND PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include) -- HDF5_LIBRARIES: *** Required variable "HDF5_HL_LIBRARY" set to NOTFOUND *** -- HDF5_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to NOTFOUND *** -- HDF5_USER_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to NOTFOUND *** -- Could NOT find HDF5 -- DEAL_II_WITH_HDF5 has unmet external dependencies. I've downloaded from 'https://www.hdfgroup.org/' the file 'hdf5-1.12.0-linux-centos7-x86_64-shared-production.tar.gz'. And I have expanded it. Also, I've set the environment variable LD_LIBRARY_PATH to the folder where I've expanded it. With no success. Any help will be welcome. Thanks a lot in advance. Curro Trigo -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected] <mailto:[email protected]> . To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/1db3deab-8dcd-40ec-b4e2-9b2b1c255bf4n%40googlegroups.com <https://groups.google.com/d/msgid/dealii/1db3deab-8dcd-40ec-b4e2-9b2b1c255bf4n%40googlegroups.com?utm_medium=email&utm_source=footer> . -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/000701d71e7a%24bc50bc10%2434f23430%24%40gmail.com.
bcolz-doc - high performant compressed data container (documentation) field3d-doc - documentation for Field3D h5utils - Herramientas de visualización para archivos HDF5 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools hdf5-tools - «Hierarchical Data Format 5» (HDF5), herramientas de ejecución libfield3d-dev - development files for Field3D libfield3d1.7 - library for storing voxel data on disk and in memory libhdf5-103 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version libhdf5-cpp-103 - Hierarchical Data Format 5 (HDF5) - C++ libraries libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-java - Hierarchical Data Format 5 (HDF5) - Java Wrapper Library libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - default MPI version libhdf5-mpich-103 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH version libhdf5-openmpi-103 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version libhe5-hdfeos-dev - Archivos de desarrollo para la biblioteca HDF-EOS5 libismrmrd-dev - development files for ISMRMRD libismrmrd-doc - documentation for ISMRMRD libismrmrd1.3 - ISMRM Raw Data format (ISMRMRD) libjhdf-doc - Java HDF Object Package - Documentation libkdf5-dev - hdf5 access to data in the INSDC Sequence Read Archives (devel) libmed-dev - Archivos de desarrollo para libmed libmed-doc - Documentación para la biblioteca MED-fichier libmed-tools - Herramientas de ejecución para manejar archivos MED libmedc-dev - Archivos de desarrollo para libmedc libmedimport-dev - Archivos de desarrollo para libmedimport0 libmedimport0v5 - Biblioteca para importar archivos de versiones antiguas libmeep-dev - biblioteca de desarrollo para usar meep libmeep-openmpi-dev - development library for using parallel (OpenMPI) version of meep libmeep-openmpi17 - library for using parallel (OpenMPI) version of meep libmeep17 - biblioteca para usar meep meep - software package for FDTD simulation python-h5py-doc - documentation for h5py python-tables-doc - base de datos jerárquica para Python basada en HDF5 - documentación bitshuffle - filter for improving compression of typed binary data casacore-tools - Tools built with CASA fast5 - utilities for manipulating Oxford Nanopore Fast5 files field3d-tools - command-line tools for Field3D glueviz - Linked data visualization hdf-compass - viewer for HDF5 and related formats hdf-compass-doc - documentation and examples for the HDF Compass hdfview - Java HDF Object viewer ismrmrd-schema - schema for ISMRMRD ismrmrd-tools - command-line tools for ISMRMRD libcoda-dev - Development files for the CODA framework for Earth sciences libcoda-java - Java interface for Common Data Access Framework libcoda-jni - Java Native interface for Common Data Access Framework libcoda15 - Library for the Common Data Access framework for Earth science libfclib-dev - read and write problems from the Friction Contact Library (headers) libfclib0 - read and write problems from the Friction Contact Library (library) libhdf5-jni - native library used by libhdf5-java libhe5-hdfeos0 - Earth Observation System extensions to HDF5 libjhdf5-java - Java HDF5 Object Package libjhdf5-jni - Java HDF5 Object Package (Java JNI library) libkdf5-2 - hdf5 access to data in the INSDC Sequence Read Archives libmed11 - Library to exchange meshed data (Fortran version) libmedc11 - Library to exchange meshed data (C version) libmeep-mpi-default-dev - development library for using parallel (OpenMPI) version of meep libmeep-mpi-default17 - library for using parallel (OpenMPI) version of meep libpbihdf-dev - tools for handling PacBio hdf5 files (development files) libpdl-io-hdf5-perl - PDL Interface to the HDF5 Data Format libpnetcdf-dev - Development files for the parallel netCDF library libsilo-dev - Development files for SILO Scientific I/O library from LLNL libsis-base-java - Base libraries used by software from the SIS division at ETH Zurich libxdmf3 - eXtensible Data Model and Format library meep-mpi-default - software package for FDTD simulation, parallel (OpenMPI) version meep-openmpi - software package for FDTD simulation, parallel (OpenMPI) version ncl-ncarg - NCAR Command Language and NCAR graphics poretools - toolkit for nanopore nucleotide sequencing data poretools-data - toolkit for nanopore nucleotide sequencing data -- sample datasets pymca - Applications and toolkit for X-ray fluorescence analysis -- scripts python-hdf5storage-doc - documentation for hdf5storage python-silx-doc - Toolbox for X-Ray data analysis - Documentation python-tables-data - hierarchical database for Python based on HDF5 - test data python3-bcolz - high performant compressed data container based on NumPy (Python 3) python3-coda - Python3 interface for CODA science formats library python3-h5netcdf - netCDF4 support via h5py for Python 3 python3-h5py - general-purpose Python interface to hdf5 (Python 3) python3-h5py-dbg - debug extensions for h5py (Python 3) python3-hdf-compass - public modules for the HDF Compass python3-hdf5storage - high-level utilities to read from and write to HDF5 (Python 3) python3-med - python3 API for MED-fichier python3-meep - software package for FDTD simulation with Python python3-meep-mpi-default - software package for FDTD simulation with Python python3-meep-openmpi - software package for FDTD simulation with Python python3-neo - Python IO library for electrophysiological data formats python3-netcdf4 - Python 3 interface to the netCDF4 (network Common Data Form) library python3-pymca5 - Applications and toolkit for X-ray fluorescence analysis -- Python 3 python3-pymca5-dbg - Applications and toolkit for X-ray fluorescence analysis -- Python 3 debug python3-silx - Toolbox for X-Ray data analysis - Python3 python3-silx-dbg - Toolbox for X-Ray data analysis - Python3 debug python3-tables - hierarchical database for Python3 based on HDF5 python3-tables-dbg - hierarchical database for Python 3 based on HDF5 (debug extension) python3-tables-lib - hierarchical database for Python3 based on HDF5 (extension) r-bioc-rhdf5 - BioConductor HDF5 interface to R r-bioc-rhdf5lib - GNU R hdf5 library r-cran-hdf5 - GNU R package interfacing the NCSA HDF5 library ruby-hdfeos5 - Ruby interface to the HDF-EOS5 library silx - Toolbox for X-Ray data analysis - Executables vitables - graphical tool to browse and edit PyTables and HDF5 files yorick-hdf5 - Hierarchical Data Format 5 interface for the Yorick language
