Hello,
It looks like the error is from boost. Which version are you using? What's
your compiler?
Best,
Bruno
On Tuesday, March 7, 2023 at 12:58:10 AM UTC-5 me20...@iittp.ac.in wrote:
> Dear Sir/Ma'am,
> trying to install dealii-9.1.1 version using candi command. i just change
> the version in candi.cfg from 9.4.2 to 9.1.1 as suggested.then uses candi
> commands to install. But i am getting error.
> please help me out.
>
> Thank you.
>
> usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/intracomm.h:101:22:
>
> warning: ‘virtual MPI::Intracomm& MPI::Intracomm::Clone() const’ can be
> marked override [-Wsuggest-override]
> 101 | virtual Intracomm& Clone() const;
> | ^~~~~
> In file included from /usr/lib/x86_64-linux-gnu/
> openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:227,
> from /usr/lib/x86_64-linux-gnu/
> openmpi/include/mpi.h:2887,
> from /home/newton/dealii-candi/tmp/
> build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:20,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/topology.h:65:21:
>
> warning: ‘virtual MPI::Cartcomm& MPI::Cartcomm::Clone() const’ can be
> marked override [-Wsuggest-override]
> 65 | virtual Cartcomm& Clone() const;
> | ^~~~~
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/topology.h:143:22:
>
> warning: ‘virtual MPI::Graphcomm& MPI::Graphcomm::Clone() const’ can be
> marked override [-Wsuggest-override]
> 143 | virtual Graphcomm& Clone() const;
> | ^~~~~
> In file included from /usr/lib/x86_64-linux-gnu/
> openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:228,
> from /usr/lib/x86_64-linux-gnu/
> openmpi/include/mpi.h:2887,
> from /home/newton/dealii-candi/tmp/
> build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:20,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/intercomm.h:75:22:
>
> warning: ‘virtual MPI::Intercomm& MPI::Intercomm::Clone() const’ can be
> marked override [-Wsuggest-override]
> 75 | virtual Intercomm& Clone() const;
> | ^~~~~
> In file included from /usr/lib/x86_64-linux-gnu/
> openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277,
> from /usr/lib/x86_64-linux-gnu/
> openmpi/include/mpi.h:2887,
> from /home/newton/dealii-candi/tmp/
> build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:20,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:
> In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*,
> int, const MPI::Datatype&), bool)’:
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25:
>
> warning: cast between incompatible function types from ‘void (*)(void*,
> void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*,
> ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’
> [-Wcast-function-type]
> 121 | (void)MPI_Op_create((MPI_User_function*)
> ompi_mpi_cxx_op_intercept,
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> ~~~~~~~~~~~~~~~~
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38:
>
> warning: cast between incompatible function types from ‘void (*)(const
> void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*,
> ompi_datatype_t**)’ [-Wcast-function-type]
> 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from /usr/include/boost/smart_ptr/
> detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/
> detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/
> detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/archive/
> detail/helper_collection.hpp:27,
> from /usr/include/boost/archive/
> detail/basic_iarchive.hpp:28,
> from /usr/include/boost/archive/
> detail/common_iarchive.hpp:21,
> from /usr/include/boost/archive/
> basic_binary_iarchive.hpp:30,
> from /usr/include/boost/archive/
> binary_iarchive_impl.hpp:21,
> from /usr/include/boost/archive/binary_iarchive.hpp:20,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/utilities.h:45,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:26,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:20,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/include/boost/detail/no_exceptions_support.hpp: At global scope:
> /usr/include/boost/detail/no_exceptions_support.hpp:17:1: note: ‘#pragma
> message: This header is deprecated. Use
> <boost/core/no_exceptions_support.hpp>
> instead.’
> 17 | BOOST_HEADER_DEPRECATED("<boost/core/no_exceptions_support.hpp>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> In file included from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/grid/grid_tools.h:45,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:48,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/include/boost/geometry/index/detail/serialization.hpp: In static
> member function ‘static
> boost::geometry::index::detail::rtree::load<MembersHolder>::node_pointer
> boost::geometry::index::detail::rtree::load<MembersHolder>::raw_apply(Archive&,
>
> unsigned int,
> boost::geometry::index::detail::rtree::load<MembersHolder>::size_type,
> boost::geometry::index::detail::rtree::load<MembersHolder>::size_type&,
> const parameters_type&, const translator_type&, boost::geometry::index::
> detail::rtree::load<MembersHolder>::allocators_type&,
> boost::geometry::index::detail::rtree::load<MembersHolder>::size_type)’:
> /usr/include/boost/geometry/index/detail/serialization.hpp:399:49: error:
> ‘Allocators’ was not declared in this scope; did you mean ‘allocators’?
> 399 | node_pointer n = rtree::create_node<Allocators,
> internal_node>::apply(allocators); // MAY THROW (A)
> | ^~~~~~~~~~
> | allocators
> /usr/include/boost/geometry/index/detail/serialization.hpp:399:74: error:
> template argument 1 is invalid
> 399 | node_pointer n = rtree::create_node<Allocators,
> internal_node>::apply(allocators); // MAY THROW (A)
> |
> ^
> /usr/include/boost/geometry/index/detail/serialization.hpp:422:49: error:
> ‘Allocators’ was not declared in this scope; did you mean ‘allocators’?
> 422 | node_pointer n = rtree::create_node<Allocators,
> leaf>::apply(allocators); // MAY THROW (A)
> | ^~~~~~~~~~
> | allocators
> /usr/include/boost/geometry/index/detail/serialization.hpp:422:65: error:
> template argument 1 is invalid
> 422 | node_pointer n = rtree::create_node<Allocators,
> leaf>::apply(allocators); // MAY THROW (A)
> | ^
> /usr/include/boost/geometry/index/detail/serialization.hpp: In function
> ‘void boost::serialization::load(Archive&, boost::geometry::index::rtree<V,
> P, I, E, A>&, unsigned int)’:
> /usr/include/boost/geometry/index/detail/serialization.hpp:552:114:
> error: wrong number of template arguments (5, should be 1)
> 552 | typedef detail::rtree::subtree_destroyer<value_type,
> options_type, translator_type, box_type, allocators_type> subtree_destroyer;
> |
> ^
> In file included from /usr/include/boost/geometry/
> index/detail/rtree/visitors/insert.hpp:26,
> from /usr/include/boost/geometry/index/rtree.hpp:65,
> from /usr/include/boost/geometry/
> algorithms/detail/within/multi_point.hpp:33,
> from /usr/include/boost/geometry/
> algorithms/detail/within/implementation.hpp:42,
> from /usr/include/boost/geometry/
> algorithms/detail/covered_by/implementation.hpp:25,
> from /usr/include/boost/geometry/
> algorithms/covered_by.hpp:24,
> from /usr/include/boost/geometry/
> algorithms/detail/buffer/buffered_piece_collection.hpp:28,
> from /usr/include/boost/geometry/
> algorithms/detail/buffer/buffer_inserter.hpp:35,
> from /usr/include/boost/geometry/
> algorithms/buffer.hpp:41,
> from /usr/include/boost/geometry/geometry.hpp:63,
> from /usr/include/boost/geometry.hpp:17,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/point.h:26,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/base/function.h:24,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:21,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/include/boost/geometry/index/detail/rtree/node/subtree_destroyer.hpp:25:7:
>
> note: provided for ‘template<class MembersHolder> class
> boost::geometry::index::detail::rtree::subtree_destroyer’
> 25 | class subtree_destroyer
> | ^~~~~~~~~~~~~~~~~
> In file included from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/grid/grid_tools.h:45,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.
> templates.h:48,
> from /home/newton/dealii-candi/tmp/
> unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
> /usr/include/boost/geometry/index/detail/serialization.hpp:566:101:
> error: wrong number of template arguments (5, should be 1)
> 566 | n = detail::rtree::load<value_type, options_type,
> translator_type, box_type, allocators_type>
> |
> ^
> /usr/include/boost/geometry/index/detail/serialization.hpp:347:7: note:
> provided for ‘template<class MembersHolder> class boost::geometry::index::
> detail::rtree::load’
> 347 | class load
> | ^~~~
> /usr/include/boost/geometry/index/detail/serialization.hpp:569:65: error:
> expression list treated as compound expression in initializer [-fpermissive]
> 569 | subtree_destroyer remover(n, tree.members().allocators());
> | ^
> /usr/include/boost/geometry/index/detail/serialization.hpp:572:17: error:
> request for member ‘release’ in ‘remover’, which is of non-class type
> ‘subtree_destroyer’ {aka ‘int’}
> 572 | remover.release();
> | ^~~~~~~
> /usr/include/boost/geometry/index/detail/serialization.hpp:579:79: error:
> expression list treated as compound expression in initializer [-fpermissive]
> 579 | subtree_destroyer remover(tree.members().root,
> tree.members().allocators());
> |
> ^
> make[2]: ***
> [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:230:
> source/numerics/CMakeFiles/obj_numerics_debug.dir/vector_tools_boundary.cc.o]
> Error 1
> make[1]: *** [CMakeFiles/Makefile2:2820:
> source/numerics/CMakeFiles/obj_numerics_debug.dir/all]
> Error 2
> make: *** [Makefile:136: all] Error 2
>
>
>
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