Hello, I'm trying to install aspect on a linux cluster for some of our users. I use lapack and blas compiled from sources. I test them with a small example and it's working.
During deall.II v 9.5.2 compilation, after some time, lots of errors occur,
for example :
* checks: - "Performing Test LAPACK_SYMBOL_CHECK" directories:
source:
"/opt/software/glicid/outils/candi-9.6.0/tmp/build/deal.II-v9.5.2/CMakeFiles/CMakeScratch/TryCompile-Ciimnh"
binary:
"/opt/software/glicid/outils/candi-9.6.0/tmp/build/deal.II-v9.5.2/CMakeFiles/CMakeScratch/TryCompile-Ciimnh"
cmakeVariables: CMAKE_C_FLAGS: "" CMAKE_C_FLAGS_RELEASE: ""
CMAKE_EXE_LINKER_FLAGS: "" CMAKE_MODULE_PATH:
"/opt/software/glicid/outils/candi-9.6.0/tmp/unpack/deal.II-v9.5.2/cmake/modules/"
buildResult: variable: "LAPACK_SYMBOL_CHECK" cached: true
stdout: | Change Dir:
/opt/software/glicid/outils/candi-9.6.0/tmp/build/deal.II-v9.5.2/CMakeFiles/CMakeScratch/TryCompile-Ciimnh
Run Build
Command(s):/opt/software/glicid/outils/candi-9.6.0/cmake-3.26.4-linux-x86_64/bin/cmake
-E env VERBOSE=1 /usr/bin/gmake -f Makefile cmTC_96882/fast &&
/usr/bin/gmake -f CMakeFiles/cmTC_96882.dir/build.make
CMakeFiles/cmTC_96882.dir/build gmake[1] : on entre dans le
répertoire
«
/opt/software/glicid/outils/candi-9.6.0/tmp/build/deal.II-v9.5.2/CMakeFiles/CMakeScratch/TryCompile-Ciimnh
»
Building C object CMakeFiles/cmTC_96882.dir/src.c.o
/opt/software/glicid/compilateurs/gcc-13.1.0/Installed/bin/gcc
-DLAPACK_SYMBOL_CHECK -o CMakeFiles/cmTC_96882.dir/src.c.o -c
/opt/software/glicid/outils/candi-9.6.0/tmp/build/deal.II-v9.5.2/CMakeFiles/CMakeScratch/TryCompile-Ciimnh/src.c
Linking C executable cmTC_96882
/opt/software/glicid/outils/candi-9.6.0/cmake-3.26.4-linux-x86_64/bin/cmake
-E cmake_link_script CMakeFiles/cmTC_96882.dir/link.txt --verbose=1
/opt/software/glicid/compilateurs/gcc-13.1.0/Installed/bin/gcc
CMakeFiles/cmTC_96882.dir/src.c.o -o cmTC_96882
/opt/software/glicid/biblio_scientifiques/lapack-3.12.0_gnu/lib/liblapack.a
/opt/software/glicid/biblio_scientifiques/lapack-3.12.0_gnu/lib/l
ibblas.a
/opt/software/glicid/biblio_scientifiques/lapack-3.12.0_gnu/lib/liblapack.a(sgelsd.o)
:
Dans la fonction « sgelsd_ » : sgelsd.f:(.text+0x215) : référence
indéfinie vers « logf »
/opt/software/glicid/biblio_scientifiques/lapack-3.12.0_gnu/lib/liblapack.a(sgesvd.o)
:
Dans la fonction « sgesvd_ » : sgesvd.f:(.text+0x9e7) : référence
indéfinie vers « _gfortran_concat_string » sgesvd.f:(.text+0xc39) :
référence indéfinie vers « _gfortran_concat_string »*
It seems to me that a gfortran libray is missing at the link step, but
where and what should I put something like "-lgfortran". Could someone give
me a hint ?
I put the CMakeConfigureLog.yaml file in attachment.
Regards,
Guy.
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CMakeConfigureLog.yaml.gz
Description: GNU Zip compressed data
