binary:debootstrap is NEW. binary:debootstrap-udeb is NEW. source:debootstrap is NEW.
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Contact [email protected] Archive: http://lists.debian.org/[email protected] From [email protected] Tue Oct 01 23:52:05 2013 Return-path: <[email protected]> Envelope-to: [email protected] Delivery-date: Tue, 01 Oct 2013 23:52:05 -0700 Received: from bolt10b.serverbox.net ([208.53.48.136] helo=bolt10b.mxthunder.net) by mail-archive.com with esmtp (Exim 4.76) (envelope-from <[email protected]>) id 1VRGI1-0006X1-DL for [email protected]; Tue, 01 Oct 2013 23:52:05 -0700 Received: by bolt10b.mxthunder.net (Postfix, from userid 12345) id 3cqSgt0cC4z4vqc9; Tue, 1 Oct 2013 23:51:30 -0700 (PDT) Received: from tr22g10.aset.psu.edu (tr22g10.aset.psu.edu [146.186.149.133]) by bolt10b.mxthunder.net (Postfix) with ESMTP id 3cqSgN1x5qz4vqYk for <[email protected]>; Tue, 1 Oct 2013 23:51:28 -0700 (PDT) Received: from lists.bx.psu.edu (lists.bx.psu.edu [128.118.200.9]) by tr22g10.aset.psu.edu (8.14.3/8.14.3) with ESMTP id r926mdIG3559568; Wed, 2 Oct 2013 02:48:44 -0400 Received: from lists.bx.psu.edu (localhost.localdomain [127.0.0.1]) by lists.bx.psu.edu (8.13.8/8.13.8) with ESMTP id r926mcCW027300; Wed, 2 Oct 2013 02:48:38 -0400 Received: from river.bx.psu.edu (river.bx.psu.edu [IPv6:2610:8:7800:14::2]) by lists.bx.psu.edu (8.13.8/8.13.8) with ESMTP id r926mbGf027296 for <[email protected]>; Wed, 2 Oct 2013 02:48:37 -0400 X-Envelope-From: [email protected] X-Envelope-To: <[email protected]> X-Virus-Scanned: by amavisd-new X-Spam-Flag: NO X-Spam-Score: -4.049 X-Spam-Level: X-Spam-Status: No, score=-4.049 tagged_above=-100 required=6.31 tests=[BAYES_00=-1.9, RP_MATCHES_RCVD=-2.149] autolearn=ham Delivered-To: <[email protected]> Received: from mail2.fmi.ch (pat1.fmi.ch [195.176.238.195]) by river.bx.psu.edu (8.14.4+Sun/8.14.4) with ESMTP id r926m4F7021149 for <[email protected]>; Wed, 2 Oct 2013 02:48:35 -0400 (EDT) Received: from exchange4.fmi.ch ([172.27.28.14]) by mail2.fmi.ch with ESMTP id Nivko1klJCSiYcAX (version=TLSv1 cipher�S128-SHA bits8 verify=NO); Wed, 02 Oct 2013 08:47:58 +0200 (CEST) Received: from [172.27.28.201] (172.27.28.201) by exchange4.fmi.ch (172.27.28.10) with Microsoft SMTP Server (TLS) id 14.3.123.3; Wed, 2 Oct 2013 08:47:58 +0200 Message-ID: <[email protected]> Date: Wed, 2 Oct 2013 08:47:57 +0200 From: Hans-Rudolf Hotz <[email protected]> User-Agent: Mozilla/5.0 (X11; Linux i686; rv:17.0) Gecko/20130801 Thunderbird/17.0.8 MIME-Version: 1.0 To: Ben Gift <[email protected]> References: <CAA1uNAk_Czehku73aeCdo=4vK4DK+o0d8B8A+j2d5=vfxvg...@mail.gmail.com> In-Reply-To: <CAA1uNAk_Czehku73aeCdo=4vK4DK+o0d8B8A+j2d5=vfxvg...@mail.gmail.com> X-Originating-IP: [172.27.28.201] X-Virus-Scanned: by bsmtpd at fmi.ch Cc: "[email protected]" <[email protected]> Subject: Re: [galaxy-dev] how to generate .len file for custom genome? (trackster error) X-BeenThere: [email protected] X-Mailman-Version: 2.1.12 Precedence: list List-Id: Discussion list and announcements for Galaxy developers and deployers <galaxy-dev.lists.bx.psu.edu> List-Unsubscribe: <http://lists.bx.psu.edu/options/galaxy-dev>, <mailto:[email protected]?subject=unsubscribe> List-Archive: <http://lists.bx.psu.edu/pipermail/galaxy-dev> List-Post: <mailto:[email protected]> List-Help: <mailto:[email protected]?subject=help> List-Subscribe: <http://lists.bx.psu.edu/listinfo/galaxy-dev>, <mailto:[email protected]?subject=subscribe> Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset="us-ascii"; Format="flowed" Sender: [email protected] Errors-To: [email protected] X-MXTHUNDER-Identifier: <[email protected]> X-MXTHUNDER-IP-Rating: 0, 146.186.149.133, Ugly c=0.387593 p=-0.348837 Source Normal X-MXTHUNDER-Scan-Result: 0 X-MXTHUNDER-Rules: 0-0-0-6070-c X-MXTHUNDER-Clean: Yes X-MXTHUNDER-Group: OK On 10/01/2013 10:21 PM, Ben Gift wrote: > Trackster complains to me when I try to load up my custom reference > genome to compare some sample data to. > > "could not load chroms for this dbkey" > > I think it's because I'm using the newest g1k human ref genome v37, and > I don't know if the hg19.len file works with it... > > I generated my own twobit file for it, but now I think I need the .len > file... > > To be honest I'm kind of lost. Where does trackster even look for my > genome, and how do I generate a .len file? > (I read the visualizations page and the custom genome docs page) Have you read this page: http://wiki.galaxyproject.org/Visualization%20Setup#Get_genome_chromosome_length_files Regards, Hans-Rudolf > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
