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--- Begin Message ---
Package: python-scipy
Version: 0.5.1-3
Severity: normal
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Hash: SHA1
When running scipy's tests as recommended by the tutorial at
<http://www.scipy.org/FAQ#head-75a5d2cc3678224d8e72fb4f58aa0f0639428722>,
I get the following output:
In [5]: scipy.test(level=1)
Found 4 tests for scipy.linsolve.umfpack.umfpack
Found 4 tests for scipy.io.array_import
Found 128 tests for scipy.linalg.fblas
Found 397 tests for scipy.ndimage
Found 10 tests for scipy.integrate.quadpack
Found 97 tests for scipy.stats.stats
Found 47 tests for scipy.linalg.decomp
Found 2 tests for scipy.integrate.quadrature
Found 95 tests for scipy.sparse.sparse
Found 20 tests for scipy.fftpack.pseudo_diffs
Found 6 tests for scipy.optimize.optimize
Found 5 tests for scipy.interpolate.fitpack
Found 1 tests for scipy.interpolate
Found 70 tests for scipy.stats.distributions
Found 12 tests for scipy.io.mmio
Found 10 tests for scipy.stats.morestats
Found 4 tests for scipy.linalg.lapack
Found 18 tests for scipy.fftpack.basic
Found 4 tests for scipy.optimize.zeros
Found 17 tests for scipy.io.mio
Found 4 tests for scipy.fftpack.helper
****************************************************************
WARNING: clapack module is empty
- -----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses flapack instead of clapack.
****************************************************************
Found 42 tests for scipy.lib.lapack
Found 2 tests for scipy.maxentropy.maxentropy
Found 358 tests for scipy.special.basic
Found 128 tests for scipy.lib.blas.fblas
Found 7 tests for scipy.linalg.matfuncs
Found 41 tests for scipy.linalg.basic
Found 1 tests for scipy.optimize.cobyla
Found 16 tests for scipy.lib.blas
Found 1 tests for scipy.integrate
Found 14 tests for scipy.linalg.blas
Found 4 tests for scipy.signal.signaltools
Found 0 tests for __main__
swig/python detected a memory leak of type 'void *', no destructor found.
swig/python detected a memory leak of type 'void *', no destructor found.
.data-ftype: c compared to data F
Calling _superlu.cgssv
Use minimum degree ordering on A'+A.
.swig/python detected a memory leak of type 'void *', no destructor found.
swig/python detected a memory leak of type 'void *', no destructor found.
.data-ftype: s compared to data f
Calling _superlu.sgssv
Use minimum degree ordering on A'+A.
.
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
.......caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................Took
13 points.
..........Resizing... 16 17 24
Resizing... 20 7 35
Resizing... 23 7 47
Resizing... 24 25 58
Resizing... 28 7 68
Resizing... 28 27 73
.....Use minimum degree ordering on A'+A.
........................Use minimum degree ordering on A'+A.
...................Resizing... 16 17 24
Resizing... 20 7 35
Resizing... 23 7 47
Resizing... 24 25 58
Resizing... 28 7 68
Resizing... 28 27 73
.....Use minimum degree ordering on A'+A.
.................Resizing... 16 17 24
Resizing... 20 7 35
Resizing... 23 7 47
Resizing... 24 25 58
Resizing... 28 7 68
Resizing... 28 27 73
.....Use minimum degree ordering on A'+A.
....................................../usr/lib/python2.4/site-packages/scipy/interpolate/fitpack2.py:410:
UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
warnings.warn(message)
..................................................................F.......................Ties
preclude use of exact statistic.
..Ties preclude use of exact statistic.
........
****************************************************************
WARNING: clapack module is empty
- -----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses flapack instead of clapack.
****************************************************************
..........................E.......................................................................................................................................................................................................................................................................................................................................................................................................................................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
...Result may be inaccurate, approximate err = 4.53219545974e-09
...Result may be inaccurate, approximate err = 7.27595761418e-12
.............................................................Residual:
1.05006950608e-07
.
****************************************************************
WARNING: cblas module is empty
- -----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses fblas instead of cblas.
****************************************************************
..................
======================================================================
ERROR: check loadmat case cellnest
- ----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 80,
in cc
self._check_case(name, expected)
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 75,
in _check_case
self._check_level(k_label, expected, matdict[k])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 33,
in _check_level
self._check_level(level_label, ev, actual[i])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 33,
in _check_level
self._check_level(level_label, ev, actual[i])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 33,
in _check_level
self._check_level(level_label, ev, actual[i])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 30,
in _check_level
assert len(expected) == len(actual), "Different list lengths at %s" % label
TypeError: len() of unsized object
======================================================================
FAIL: check_rvs (scipy.stats.tests.test_distributions.test_randint)
- ----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/lib/python2.4/site-packages/scipy/stats/tests/test_distributions.py",
line 84, in check_rvs
assert isinstance(val, numpy.ScalarType),`type(val)`
AssertionError: <type 'numpy.ndarray'>
- ----------------------------------------------------------------------
Ran 1569 tests in 6.013s
FAILED (failures=1, errors=1)
- -- System Information:
Debian Release: 4.0
APT prefers testing
APT policy: (530, 'testing'), (520, 'unstable'), (510, 'experimental')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-3-k7
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
Versions of packages python-scipy depends on:
ii atlas3-base [liblapack.s 3.6.0-20.2 Automatically Tuned Linear Algebra
ii fftw2 2.1.3-20 library for computing Fast Fourier
ii lapack3 [liblapack.so.3] 3.0.20000531a-6 library of linear algebra routines
ii libc6 2.3.6.ds1-8 GNU C Library: Shared libraries
ii libg2c0 1:3.4.6-4 Runtime library for GNU Fortran 77
ii libgcc1 1:4.1.1-19 GCC support library
ii libstdc++6 4.1.1-19 The GNU Standard C++ Library v3
ii libufsparse 1.2-7 collection of libraries for comput
ii python 2.4.4-2 An interactive high-level object-o
ii python-central 0.5.12 register and build utility for Pyt
ii python-numpy 1:1.0rc1-1 Numerical Python adds a fast array
ii python-numpy-ext 1:1.0rc1-1 Numerical Python adds a fast array
Versions of packages python-scipy recommends:
ii g++ [c++-compiler] 4:4.1.1-13 The GNU C++ compiler
ii g++-3.4 [c++-compiler] 3.4.6-4 The GNU C++ compiler
ii g++-4.1 [c++-compiler] 4.1.1-19 The GNU C++ compiler
- -- no debconf information
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--- End Message ---
--- Begin Message ---
Package: python-scipy
Version: 0.5.2-7
Hi,
I am closing this bug, because I am not able to reproduce it anymore on
the latest version.
Thanks for your report,
Regards
Marco
--- End Message ---
