Your message dated Thu, 09 Aug 2007 21:47:03 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#436975: fixed in gff2aplot 2.0-4
has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere. Please contact me immediately.)
Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message ---
Package: gff2aplot
Version: 2.0-3
Severity: wishlist
User: [EMAIL PROTECTED]
Usertags: nostrip
Hello,
There was a problem while autobuilding your package with
DEB_BUILD_OPTIONS=nostrip.
Final binaries are still stripped.
If you call dh_strip correctly in debian/rules, this may mean that upstream
is stripping anyway.
You should look for call to strip, ld -s or install -s which may strip binaries.
> Automatic build of gff2aplot_2.0-3 on octave for sid/i386 by rebuildd 0.2.1
> Build started at 2007-08-09 19:21:54.223085
> ******************************************************************************
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Need to get 338kB of source archives.
> Get:1 http://ftp.fr.debian.org sid/main gff2aplot 2.0-3 (dsc) [606B]
> Get:2 http://ftp.fr.debian.org sid/main gff2aplot 2.0-3 (tar) [328kB]
> Get:3 http://ftp.fr.debian.org sid/main gff2aplot 2.0-3 (diff) [8770B]
> Fetched 338kB in 0s (700kB/s)
> Download complete and in download only mode
> W: /home/staff/jd/.pbuilderrc does not exist
> I: using fakeroot in build.
> Current time: Thu Aug 9 19:21:59 UTC 2007
> pbuilder-time-stamp: 1186687319
> Building the build Environment
> -> extracting base tarball [/var/cache/pbuilder/sid.tgz]
> -> creating local configuration
> -> copying local configuration
> -> mounting /proc filesystem
> -> mounting /dev/pts filesystem
> -> policy-rc.d already exists
> Obtaining the cached apt archive contents
> Installing the build-deps
> -> Attempting to parse the build-deps
> -> Considering build-dep cdbs (>= 0.4.23-1.1)
> -> Trying cdbs
> -> Considering build-dep patchutils
> -> Trying patchutils
> -> Considering build-dep debhelper (>= 4.1.0)
> -> Trying debhelper
> -> Installing cdbs patchutils debhelper
> Reading package lists...
> Building dependency tree...
> Reading state information...
> The following extra packages will be installed:
> file gettext gettext-base html2text intltool-debian libmagic1 po-debconf
> Suggested packages:
> devscripts doc-base dh-make cvs gettext-doc
> Recommended packages:
> autotools-dev curl wget lynx libmail-sendmail-perl libcompress-zlib-perl
> The following NEW packages will be installed:
> cdbs debhelper file gettext gettext-base html2text intltool-debian libmagic1
> patchutils po-debconf
> debconf: delaying package configuration, since apt-utils is not installed
> 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
> Need to get 0B/3942kB of archives.
> After unpacking 11.6MB of additional disk space will be used.
> Selecting previously deselected package libmagic1.
> (Reading database ... 8966 files and directories currently installed.)
> Unpacking libmagic1 (from .../libmagic1_4.21-2_i386.deb) ...
> Selecting previously deselected package file.
> Unpacking file (from .../archives/file_4.21-2_i386.deb) ...
> Selecting previously deselected package gettext-base.
> Unpacking gettext-base (from .../gettext-base_0.16.1-2_i386.deb) ...
> Selecting previously deselected package cdbs.
> Unpacking cdbs (from .../archives/cdbs_0.4.49_all.deb) ...
> Selecting previously deselected package html2text.
> Unpacking html2text (from .../html2text_1.3.2a-3_i386.deb) ...
> Selecting previously deselected package gettext.
> Unpacking gettext (from .../gettext_0.16.1-2_i386.deb) ...
> Selecting previously deselected package intltool-debian.
> Unpacking intltool-debian (from
> .../intltool-debian_0.35.0+20060710.1_all.deb) ...
> Selecting previously deselected package po-debconf.
> Unpacking po-debconf (from .../po-debconf_1.0.9_all.deb) ...
> Selecting previously deselected package debhelper.
> Unpacking debhelper (from .../debhelper_5.0.53_all.deb) ...
> Selecting previously deselected package patchutils.
> Unpacking patchutils (from .../patchutils_0.2.31-4_i386.deb) ...
> Setting up libmagic1 (4.21-2) ...
>
> Setting up file (4.21-2) ...
> Setting up gettext-base (0.16.1-2) ...
>
> Setting up cdbs (0.4.49) ...
>
> Setting up html2text (1.3.2a-3) ...
>
> Setting up gettext (0.16.1-2) ...
>
> Setting up intltool-debian (0.35.0+20060710.1) ...
> Setting up po-debconf (1.0.9) ...
> Setting up debhelper (5.0.53) ...
> Setting up patchutils (0.2.31-4) ...
> -> Finished parsing the build-deps
> Reading package lists...
> Building dependency tree...
> Reading state information...
> fakeroot is already the newest version.
> 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
> Copying back the cached apt archive contents
> Copying source file
> -> copying [gff2aplot_2.0-3.dsc]
> -> copying [./gff2aplot_2.0.orig.tar.gz]
> -> copying [./gff2aplot_2.0-3.diff.gz]
> Extracting source
> gpg: can't open `/gnupg/options.skel': No such file or directory
> gpg: Signature made Fri Jun 3 05:42:13 2005 UTC using DSA key ID C09FD35A
> gpg: Can't check signature: public key not found
> dpkg-source: extracting gff2aplot in gff2aplot-2.0
> dpkg-source: unpacking gff2aplot_2.0.orig.tar.gz
> dpkg-source: applying ./gff2aplot_2.0-3.diff.gz
> -> Building the package
> Setting DEB_BUILD_OPTIONS=nostrip
> dpkg-buildpackage: source package is gff2aplot
> dpkg-buildpackage: source version is 2.0-3
> dpkg-buildpackage: source changed by Nelson A. de Oliveira <[EMAIL PROTECTED]>
> dpkg-buildpackage: host architecture i386
> dpkg-buildpackage: source version without epoch 2.0-3
> fakeroot debian/rules clean
> test -x debian/rules
> test "`id -u`" = 0
> /usr/bin/make -f debian/rules reverse-config
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> make[1]: Nothing to be done for `reverse-config'.
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> if [ "reverse-patches" = "reverse-patches" ]; then rm -f
> debian/stamp-patched; fi
> patches: debian/patches/01-makefile.diff debian/patches/02-blat2gff.diff
> debian/patches/03-parseblast.diff
> Patch debian/patches/03-parseblast.diff is not applied.
> Patch debian/patches/02-blat2gff.diff is not applied.
> Patch debian/patches/01-makefile.diff is not applied.
> if [ "reverse-patches" != "reverse-patches" ]; then touch
> debian/stamp-patched; fi
> if [ "reverse-patches" != "reverse-patches" ] ; then \
> /usr/bin/make -f debian/rules update-config ; \
> fi
> for dir in debian/patches ; do \
> rm -f $dir/*.log ; \
> done
> dh_clean
> /usr/bin/make -C . OPTIMIZE="-g -Wall -O2" -k clean
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> ###
> ### RUNNING MAKEFILE
> ###
> ### Thu Aug 9 19:25:34 UTC 2007 -- root
> ###
> ###
> ### MAKEFILE DONE...
> ###
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> rm -f debian/stamp-makefile-build
> rm -f debian/stamp-makefile-check
> rm -f src/ali2gff/ali2gff bin/ali2gff
> dpkg-source -b gff2aplot-2.0
> dpkg-source: building gff2aplot using existing gff2aplot_2.0.orig.tar.gz
> dpkg-source: building gff2aplot in gff2aplot_2.0-3.diff.gz
> dpkg-source: building gff2aplot in gff2aplot_2.0-3.dsc
> debian/rules build
> test -x debian/rules
> mkdir -p "."
> /usr/bin/make -f debian/rules reverse-config
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> make[1]: Nothing to be done for `reverse-config'.
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f
> debian/stamp-patched; fi
> patches: debian/patches/01-makefile.diff debian/patches/02-blat2gff.diff
> debian/patches/03-parseblast.diff
> Trying patch debian/patches/01-makefile.diff at level 1 ... success.
> Trying patch debian/patches/02-blat2gff.diff at level 1 ... success.
> Trying patch debian/patches/03-parseblast.diff at level 1 ... success.
> if [ "debian/stamp-patched" != "reverse-patches" ]; then touch
> debian/stamp-patched; fi
> if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
> /usr/bin/make -f debian/rules update-config ; \
> fi
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> make[1]: Nothing to be done for `update-config'.
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> /usr/bin/make -C . OPTIMIZE="-g -Wall -O2" all
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> ###
> ### RUNNING MAKEFILE
> ###
> ### Thu Aug 9 19:26:01 UTC 2007 -- pbuilder
> ###
> ### Finishing PERL script from "src/gff2aplot.pl" -> "bin/gff2aplot.pl"
> ### Finishing PERL script from "src/parseblast.pl" -> "bin/parseblast.pl"
> ### Finishing PERL script from "src/blat2gff.pl" -> "bin/blat2gff.pl"
> ### Finishing PERL script from "src/sim2gff.pl" -> "bin/sim2gff.pl"
> ### Making ALI2GFF...
> make[2]: Entering directory `/tmp/buildd/gff2aplot-2.0/src/ali2gff'
> make[2]: Leaving directory `/tmp/buildd/gff2aplot-2.0/src/ali2gff'
> `./src/ali2gff/ali2gff' -> `./bin/ali2gff'
> mode of `bin/gff2aplot.pl' changed to 0755 (rwxr-xr-x)
> mode of `bin/parseblast.pl' changed to 0755 (rwxr-xr-x)
> mode of `bin/blat2gff.pl' changed to 0755 (rwxr-xr-x)
> mode of `bin/sim2gff.pl' changed to 0755 (rwxr-xr-x)
> ###
> ### MAKEFILE DONE...
> ###
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> touch debian/stamp-makefile-build
> /usr/bin/make -C . OPTIMIZE="-g -Wall -O2" test
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> ### SORRY !!! Tests were not implemented yet...
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> touch debian/stamp-makefile-check
> fakeroot debian/rules binary
> test -x debian/rules
> test "`id -u`" = 0
> dh_clean -k
> dh_installdirs -A
> mkdir -p "."
> /usr/bin/make -C . OPTIMIZE="-g -Wall -O2" install
> DESTDIR=/tmp/buildd/gff2aplot-2.0/debian/gff2aplot
> prefix=/tmp/buildd/gff2aplot-2.0/debian/gff2aplot
> make[1]: Entering directory `/tmp/buildd/gff2aplot-2.0'
> ###
> ### RUNNING MAKEFILE
> ###
> ### Thu Aug 9 19:26:16 UTC 2007 -- root
> ###
> ### COPYING BIN FILES TO /usr/local/bin...
> /usr/bin/install -s -m 755 bin/ali2gff
> /tmp/buildd/gff2aplot-2.0/debian/gff2aplot/usr/bin
> /usr/bin/install -m 755 bin/blat2gff.pl
> /tmp/buildd/gff2aplot-2.0/debian/gff2aplot/usr/bin/blat2gff
> /usr/bin/install -m 755 bin/gff2aplot.pl
> /tmp/buildd/gff2aplot-2.0/debian/gff2aplot/usr/bin/gff2aplot
> /usr/bin/install -m 755 bin/parseblast.pl
> /tmp/buildd/gff2aplot-2.0/debian/gff2aplot/usr/bin/parseblast
> /usr/bin/install -m 755 bin/sim2gff.pl
> /tmp/buildd/gff2aplot-2.0/debian/gff2aplot/usr/bin/sim2gff
> ###
> ### MAKEFILE DONE...
> ###
> make[1]: Leaving directory `/tmp/buildd/gff2aplot-2.0'
> dh_installdirs -pgff2aplot
> dh_installdocs -pgff2aplot ./README
> dh_installexamples -pgff2aplot examples/*
> dh_installman -pgff2aplot debian/*.1
> dh_installinfo -pgff2aplot
> dh_installmenu -pgff2aplot
> dh_installcron -pgff2aplot
> dh_installinit -pgff2aplot
> dh_installdebconf -pgff2aplot
> dh_installemacsen -pgff2aplot
> dh_installcatalogs -pgff2aplot
> dh_installpam -pgff2aplot
> dh_installlogrotate -pgff2aplot
> dh_installlogcheck -pgff2aplot
> dh_installmime -pgff2aplot
> dh_installchangelogs -pgff2aplot
> dh_installudev -pgff2aplot
> dh_install -pgff2aplot
> dh_link -pgff2aplot
> dh_strip -pgff2aplot
> dh_compress -pgff2aplot
> dh_fixperms -pgff2aplot
> dh_makeshlibs -pgff2aplot
> dh_installdeb -pgff2aplot
> dh_perl -pgff2aplot
> dh_shlibdeps -pgff2aplot
> dh_gencontrol -pgff2aplot
> dh_md5sums -pgff2aplot
> dh_builddeb -pgff2aplot
> dpkg-deb: building package `gff2aplot' in `../gff2aplot_2.0-3_i386.deb'.
> dpkg-genchanges
> dpkg-genchanges: not including original source code in upload
> dpkg-buildpackage: binary and diff upload (original source NOT included)
> Copying back the cached apt archive contents
> -> unmounting dev/pts filesystem
> -> unmounting proc filesystem
> -> cleaning the build env
> -> removing directory /var/cache/pbuilder/build//7886 and its
> subdirectories
> Current time: Thu Aug 9 19:28:26 UTC 2007
> pbuilder-time-stamp: 1186687706
> Checking gff2aplot_2.0-3_i386.deb for stripped binaries...
> ---------------------------------------
> /tmp/gff2aplot_2.0-3_i386.deb/usr/bin/ali2gff: ELF 32-bit LSB executable,
> Intel 80386, version 1 (SYSV), for GNU/Linux 2.6.8, dynamically linked (uses
> shared libs), stripped
>
> ...done
> Removing result files...
> ...done
> ******************************************************************************
> Finished with status BUILD_FAILED at 2007-08-09 19:28:40.225504
> Build needed 0:06:46.002419
--
Julien Danjou
.''`. Debian Developer
: :' : http://julien.danjou.info
`. `' http://people.debian.org/~acid
`- 9A0D 5FD9 EB42 22F6 8974 C95C A462 B51E C2FE E5CD
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: gff2aplot
Source-Version: 2.0-4
We believe that the bug you reported is fixed in the latest version of
gff2aplot, which is due to be installed in the Debian FTP archive:
gff2aplot_2.0-4.diff.gz
to pool/main/g/gff2aplot/gff2aplot_2.0-4.diff.gz
gff2aplot_2.0-4.dsc
to pool/main/g/gff2aplot/gff2aplot_2.0-4.dsc
gff2aplot_2.0-4_i386.deb
to pool/main/g/gff2aplot/gff2aplot_2.0-4_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nelson A. de Oliveira <[EMAIL PROTECTED]> (supplier of updated gff2aplot
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Thu, 09 Aug 2007 17:16:13 -0300
Source: gff2aplot
Binary: gff2aplot
Architecture: source i386
Version: 2.0-4
Distribution: unstable
Urgency: low
Maintainer: Nelson A. de Oliveira <[EMAIL PROTECTED]>
Changed-By: Nelson A. de Oliveira <[EMAIL PROTECTED]>
Description:
gff2aplot - pair-wise alignment-plots for genomic sequences in PostScript
Closes: 436975
Changes:
gff2aplot (2.0-4) unstable; urgency=low
.
* Updated patches/01-makefile.diff, so ali2gff doesn't get stripped when
using DEB_BUILD_OPTIONS=nostrip (Closes: #436975);
* Updated maintainer email;
* Updated Standards-Version to 3.7.2;
* Updated compat version to 5;
* Updated watch file.
Files:
ae82e771ba1870f6a3aff4cbebf051d6 573 science optional gff2aplot_2.0-4.dsc
b0c3490c2306914f024b788aad35e7d2 9187 science optional gff2aplot_2.0-4.diff.gz
ba8596d3daa971c148ce69d3ce56079a 326738 science optional
gff2aplot_2.0-4_i386.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.6 (GNU/Linux)
iD8DBQFGu4abAQwuptkwlkQRAgaFAJ9xfECoj4q37Oa9P7AkJGPItciAVwCfVQ0t
VtyLQRv4VWppHM8hlTmpyuM=
=Gugx
-----END PGP SIGNATURE-----
--- End Message ---
