Your message dated Tue, 11 Sep 2007 05:47:05 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#435208: fixed in gromacs 3.3.1-6
has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message ---
Package: gromacs
Version: 3.3.1-5
Severity: minor
/usr/share/doc/gromacs/copyright lists the license as being GPL
version 2 only, but this does not seem to be correct. All of the
source files list the license as being GPL version 2 or later.
e.g the file src/kernel/grompp.c says:
* This source code is part of
*
* G R O M A C S
*
* GROningen MAchine for Chemical Simulations
*
* VERSION 3.2.0
* Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
* Copyright (c) 1991-2000, University of Groningen, The Netherlands.
* Copyright (c) 2001-2004, The GROMACS development team,
* check out http://www.gromacs.org for more information.
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (500, 'testing'), (500, 'stable')
Architecture: i386 (i686)
Kernel: Linux 2.6.16.33-vpsX (SMP w/1 CPU core)
Locale: LANG=en_US, LC_CTYPE=en_US (charmap=ISO-8859-1)
Shell: /bin/sh linked to /bin/bash
Versions of packages gromacs depends on:
ii fftw3 3.1.2-2 library for computing Fast Fourier
ii lesstif2 1:0.95.0-2+b1 OSF/Motif 2.1 implementation relea
ii libc6 2.6-2 GNU C Library: Shared libraries
ii libice6 1:1.0.3-2 X11 Inter-Client Exchange library
ii libsm6 2:1.0.3-1+b1 X11 Session Management library
ii libx11-6 2:1.0.3-7 X11 client-side library
ii libxext6 1:1.0.3-2 X11 miscellaneous extension librar
ii libxp6 1:1.0.0.xsf1-1 X Printing Extension (Xprint) clie
ii libxt6 1:1.0.5-3 X11 toolkit intrinsics library
Versions of packages gromacs recommends:
pn gromacs-doc <none> (no description available)
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: gromacs
Source-Version: 3.3.1-6
We believe that the bug you reported is fixed in the latest version of
gromacs, which is due to be installed in the Debian FTP archive:
gromacs-dev_3.3.1-6_i386.deb
to pool/main/g/gromacs/gromacs-dev_3.3.1-6_i386.deb
gromacs-doc_3.3.1-6_all.deb
to pool/main/g/gromacs/gromacs-doc_3.3.1-6_all.deb
gromacs-lam_3.3.1-6_i386.deb
to pool/main/g/gromacs/gromacs-lam_3.3.1-6_i386.deb
gromacs-mpich_3.3.1-6_i386.deb
to pool/main/g/gromacs/gromacs-mpich_3.3.1-6_i386.deb
gromacs_3.3.1-6.diff.gz
to pool/main/g/gromacs/gromacs_3.3.1-6.diff.gz
gromacs_3.3.1-6.dsc
to pool/main/g/gromacs/gromacs_3.3.1-6.dsc
gromacs_3.3.1-6_i386.deb
to pool/main/g/gromacs/gromacs_3.3.1-6_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nicholas Breen <[EMAIL PROTECTED]> (supplier of updated gromacs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Mon, 10 Sep 2007 17:29:10 -0700
Source: gromacs
Binary: gromacs gromacs-lam gromacs-dev gromacs-mpich gromacs-doc
Architecture: source i386 all
Version: 3.3.1-6
Distribution: unstable
Urgency: low
Maintainer: Nicholas Breen <[EMAIL PROTECTED]>
Changed-By: Nicholas Breen <[EMAIL PROTECTED]>
Description:
gromacs - Molecular dynamics simulator, with building and analysis tools
gromacs-dev - GROMACS molecular dynamics sim, development kit
gromacs-doc - GROMACS molecular dynamics sim, documentation
gromacs-lam - Molecular dynamics sim, binaries for LAM-MPI parallelization
gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
Closes: 428795 435208
Changes:
gromacs (3.3.1-6) unstable; urgency=low
.
* Update alpha Build-Depends from g77 to gfortran, and set F77 variable
in debian/rules accordingly.
* Increase update-alternatives priority of mdrun_mpi.lam to 20.
* src/tools/gmx_xpm2ps.c: explicitly initialize 'ninp' to 0 to work
around a peculiar compiler/shared-library/i386 bug. (Closes: #428795)
* debian/copyright: clarify license as GPL v2 or later. Add Depends: on
base-files (>=4.0.1) until the next release to ensure that the GPL v3
license text is installed as well. (Closes: #435208)
* When building from source, two DEB_BUILD_OPTIONS are available:
- "parallel" adds -j4 to the make flags.
- "double" will compile binaries for both single-precision (the
default) and double-precision (with _d suffix) floating point
operations.
* Minor packaging cleanups: set debhelper compatibility level to 5,
clarify versioned dependencies for -doc and -dev packages, improve
"make clean" error handling, clean up lintian overrides.
Files:
8fcba6134e42210b3dac789fd9f8a744 800 science extra gromacs_3.3.1-6.dsc
74a4bb5c175a169e9b132d12580bc764 1822874 science extra gromacs_3.3.1-6.diff.gz
7a009439e9d0e6e6782ed33fdd70a323 2116418 doc extra gromacs-doc_3.3.1-6_all.deb
852ea096cbf8cd68b16dba72f428119e 3494040 science extra gromacs_3.3.1-6_i386.deb
ff14f685737e14d999b0106327ccdeaf 5477732 devel extra
gromacs-dev_3.3.1-6_i386.deb
dbd41f5ed31c20065511a8449fa40b7b 1631572 science extra
gromacs-mpich_3.3.1-6_i386.deb
77955851e457a9070644d230e17b224e 1375814 science extra
gromacs-lam_3.3.1-6_i386.deb
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