Your message dated Tue, 09 Oct 2007 20:47:19 +0000 with message-id <[EMAIL PROTECTED]> and subject line Bug#445722: fixed in r-base 2.6.0-2 has caused the attached Bug report to be marked as done.
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--- Begin Message ---Package: r-base-dev Version: 2.6.0-1 Severity: important When attempting to update Zelig today, I got the following error message: dh_installdirs usr/lib/R/site-library if test -f /usr/bin/java; then \ R CMD javareconf; \ fi Java interpreter : /usr/bin/java Java version : 1.6.0_03 Java home path : /usr/lib/jvm/ia32-java-6-sun-1.6.0.03/jre Java compiler : not present Java headers gen.: Java archive tool: /usr/bin/jar ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded: ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded: ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded: ignored. Java library path: $(JAVA_HOME)/lib/i386/server:$(JAVA_HOME)/lib/i386:$(JAVA_HOME)/../lib/i386::/usr/java/packages/lib/i386:/lib:/usr/lib JNI linker flags : -L$(JAVA_HOME)/lib/i386/server -L$(JAVA_HOME)/lib/i386 -L$(JAVA_HOME)/../lib/i386 -L -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm JNI cpp flags : ~autodetect~ Updating Java configuration in /etc/R /usr/lib/R/bin/javareconf: line 303: /etc/R/Makeconf.new: Permission denied *** cannot create /etc/R/Makeconf.new *** Please run as root if required. make: *** [R_any_arch] Error 1 debuild: fatal error at line 1237: fakeroot debian/rules binary failed This appears to be related to the recent change to R-cran.mk to call R CMD javareconf. Unfortunately, since Debian best practices are not to build packages as root (instead using fakeroot), R CMD javareconf fails. I suppose the simplest solution here is to ignore the error if R CMD javareconf fails, but I'm open to other suggestions. -- System Information: Debian Release: lenny/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 2.6.22.6 (SMP w/2 CPU cores; PREEMPT) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages r-base-dev depends on: ii atlas3-base-dev [libbla 3.6.0-20.6 Automatically Tuned Linear Algebra ii build-essential 11.3 informational list of build-essent ii dpatch 2.0.27 patch maintenance system for Debia ii g++-4.2 4.2.1-6 The GNU C++ compiler ii gcc-4.2 4.2.1-6 The GNU C compiler ii gfortran-4.2 4.2.1-6 The GNU Fortran 95 compiler ii libbz2-dev 1.0.3-7 high-quality block-sorting file co ii libjpeg62-dev 6b-14 Development files for the IJG JPEG ii libncurses5-dev 5.6+20070908-1 Developer's libraries and docs for ii libpcre3-dev 7.3-2 Perl 5 Compatible Regular Expressi ii libpng12-dev 1.2.15~beta5-2 PNG library - development ii libreadline5-dev 5.2-3 GNU readline and history libraries ii r-base-core 2.6.0-1 GNU R core of statistical computin ii refblas3-dev [libblas-3 1.2-8 Basic Linear Algebra Subroutines 3 ii zlib1g-dev 1:1.2.3.3.dfsg-6 compression library - development r-base-dev recommends no packages. -- no debconf information
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--- Begin Message ---Source: r-base Source-Version: 2.6.0-2 We believe that the bug you reported is fixed in the latest version of r-base, which is due to be installed in the Debian FTP archive: r-base-core_2.6.0-2_i386.deb to pool/main/r/r-base/r-base-core_2.6.0-2_i386.deb r-base-dev_2.6.0-2_all.deb to pool/main/r/r-base/r-base-dev_2.6.0-2_all.deb r-base-html_2.6.0-2_all.deb to pool/main/r/r-base/r-base-html_2.6.0-2_all.deb r-base-latex_2.6.0-2_all.deb to pool/main/r/r-base/r-base-latex_2.6.0-2_all.deb r-base_2.6.0-2.diff.gz to pool/main/r/r-base/r-base_2.6.0-2.diff.gz r-base_2.6.0-2.dsc to pool/main/r/r-base/r-base_2.6.0-2.dsc r-base_2.6.0-2_all.deb to pool/main/r/r-base/r-base_2.6.0-2_all.deb r-doc-html_2.6.0-2_all.deb to pool/main/r/r-base/r-doc-html_2.6.0-2_all.deb r-doc-info_2.6.0-2_all.deb to pool/main/r/r-base/r-doc-info_2.6.0-2_all.deb r-doc-pdf_2.6.0-2_all.deb to pool/main/r/r-base/r-doc-pdf_2.6.0-2_all.deb r-mathlib_2.6.0-2_i386.deb to pool/main/r/r-base/r-mathlib_2.6.0-2_i386.deb r-recommended_2.6.0-2_all.deb to pool/main/r/r-base/r-recommended_2.6.0-2_all.deb A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [EMAIL PROTECTED], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dirk Eddelbuettel <[EMAIL PROTECTED]> (supplier of updated r-base package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [EMAIL PROTECTED]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.7 Date: Tue, 09 Oct 2007 14:20:12 -0500 Source: r-base Binary: r-base-core r-base-latex r-recommended r-doc-html r-doc-info r-base-dev r-mathlib r-base-html r-doc-pdf r-base Architecture: source all i386 Version: 2.6.0-2 Distribution: unstable Urgency: low Maintainer: Dirk Eddelbuettel <[EMAIL PROTECTED]> Changed-By: Dirk Eddelbuettel <[EMAIL PROTECTED]> Description: r-base - GNU R statistical computing language and environment r-base-core - GNU R core of statistical computing language and environment r-base-dev - GNU R installation of auxiliary GNU R packages r-base-html - GNU R html docs for statistical computing system functions r-base-latex - GNU R LaTeX docs for statistical computing system functions r-doc-html - GNU R html manuals for statistical computing system r-doc-info - GNU R info manuals statistical computing system r-doc-pdf - GNU R pdf manuals for statistical computing system r-mathlib - GNU R standalone mathematics library r-recommended - GNU R collection of recommended packages [metapackage] Closes: 445722 Changes: r-base (2.6.0-2) unstable; urgency=low . * debian/r-cran.mk: Set Java (re-)conf. call to "R CMD javareconf -e ''" to not require write to Makeconf file (Closes: #445722) Files: 4445b6964ce141d0ed7403787171a394 1027 math optional r-base_2.6.0-2.dsc 91476062ad544824516a859a69d898b7 56387 math optional r-base_2.6.0-2.diff.gz cb9dcf1f4a87691a2c6ed84da4b98f8c 10399628 math optional r-base-core_2.6.0-2_i386.deb 40acd188dc881caa7b0cb9b06861c7e7 460124 math optional r-mathlib_2.6.0-2_i386.deb 473ed1af2879f1c86ce199a41cde2495 25052 math optional r-base_2.6.0-2_all.deb 86255df0bf89cc21a0035ef1deee7008 2902 devel optional r-base-dev_2.6.0-2_all.deb 75a836fec57551bdc315819fe309457f 1225322 math extra r-base-html_2.6.0-2_all.deb 648d77fc5c88a9ab2e5b42186088ce4d 1144192 math extra r-base-latex_2.6.0-2_all.deb 7d72ed2e2ed848f0e162198f2e49abaf 6434926 doc optional r-doc-pdf_2.6.0-2_all.deb bc821bffa4363cb3758975f0ef03a59d 561510 doc optional r-doc-html_2.6.0-2_all.deb 4636ade5027a5cb0fc4ec3889e68917f 492868 doc optional r-doc-info_2.6.0-2_all.deb bced13f57f932d9a51b716f49afcdc07 1966 math optional r-recommended_2.6.0-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.6 (GNU/Linux) iD8DBQFHC9k0CZSR95Gw07cRAkGcAJ0d77hRUa8Zlxx5PnFiXYU5xxdctACfTdbr oKs4xlhz4je2G6DKRYIuBJE= =U8yO -----END PGP SIGNATURE-----
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