Your message dated Wed, 19 Dec 2007 04:02:03 +0000 with message-id <[EMAIL PROTECTED]> and subject line Bug#456721: fixed in openmpi 1.2.4-5 has caused the attached Bug report to be marked as done.
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--- Begin Message ---Package: libpetsc2.3.3 Version: 2.3.3-3 Severity: normal --- Please enter the report below this line. --- Hi Adam, libmesh FTBFS with these errors (on buildbots, pbuilder and my system): configure:1632: mpicxx -Wl,-soname,libmesh.so.0.6.1,-lpetsc,-lpetscdm,-lpetscksp,-lpetscmat,-lpetscsnes,-lpetscts,-lpetscvec conftest.cc >&5 /usr/bin/ld: warning: libmpi_f90.so.0, needed by /usr/lib/gcc/i486-linux-gnu/4.2.3/../../../../lib/libpetsc.so, not found (try using -rpath or -rpath-link) /usr/bin/ld: warning: libmpi_f77.so.0, needed by /usr/lib/gcc/i486-linux-gnu/4.2.3/../../../../lib/libpetsc.so, not found (try using -rpath or -rpath-link) /usr/lib/gcc/i486-linux-gnu/4.2.3/../../../../lib/libpetsc.so: undefined reference to `mpi_init_' collect2: ld returned 1 exit status which I think is a bug in petsc, because: $ ldd /usr/lib/libpetsc.so linux-gate.so.1 => (0xffffe000) libX11.so.6 => /usr/lib/libX11.so.6 (0xb7dca000) libsuperlu.so.3 => /usr/lib/libsuperlu.so.3 (0xb7d82000) libumfpack.so.1 => /usr/lib/libumfpack.so.1 (0xb7cdb000) libamd.so.1 => /usr/lib/libamd.so.1 (0xb7cd3000) liblapack.so.3 => /usr/lib/atlas/liblapack.so.3 (0xb7683000) libblas.so.3 => /usr/lib/atlas/libblas.so.3 (0xb7324000) libdl.so.2 => /lib/libdl.so.2 (0xb7320000) libmpi.so.0 => not found libopen-rte.so.0 => not found libopen-pal.so.0 => not found libnsl.so.1 => /lib/libnsl.so.1 (0xb7307000) libutil.so.1 => /lib/libutil.so.1 (0xb7303000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb72f8000) libpthread.so.0 => /lib/libpthread.so.0 (0xb72e0000) libmpi_f90.so.0 => not found libmpi_f77.so.0 => not found libgfortran.so.2 => /usr/lib/libgfortran.so.2 (0xb724a000) libm.so.6 => /lib/libm.so.6 (0xb7224000) libc.so.6 => /lib/libc.so.6 (0xb70d6000) libXau.so.6 => /usr/lib/libXau.so.6 (0xb70d3000) libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb70ce000) libg2c.so.0 => /usr/lib/libg2c.so.0 (0xb70a6000) /lib/ld-linux.so.2 (0x80000000) Notice especially the lines: libmpi_f90.so.0 => not found libmpi_f77.so.0 => not found Also: $ ls /usr/lib/libmpi_f90.so* /usr/lib/libmpi_f90.so only prints libmpi_f90.so, but no libmpi_f90.so.0. I am not much expert in these things, but I'll try to rebuild petsc, maybe the fix is as simple as that. I'll report here. But in any case, probably a new upload of petsc is needed, unless the problem is somewhere else - don't know where though. Feel free to adjust the severity. Ondrej --- System information. --- Architecture: i386 Kernel: Linux 2.6.22-2-686 Debian Release: lenny/sid 500 unstable ftp.cz.debian.org --- Package information. --- Depends (Version) | Installed ====================================-+-================== atlas3-base | 3.6.0-20.6 OR lapack3 | 3.0.20000531a-6.1 OR liblapack.so.3 | atlas3-base | 3.6.0-20.6 OR refblas3 | 1.2-8 OR libblas.so.3 | libc6 (>= 2.6.1-1) | 2.7-4 libgcc1 (>= 1:4.2.1) | 1:4.2.2-4 libgfortran2 (>= 4.2.1) | 4.2.2-4 libopenmpi1 | 1.2.4-4 libsuitesparse | 3.0.0-7 libsuperlu3 (>= 3.0+20070106) | 3.0+20070106-1 libx11-6 | 2:1.0.3-7 openmpi-bin | 1.2.4-4
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--- Begin Message ---Source: openmpi Source-Version: 1.2.4-5 We believe that the bug you reported is fixed in the latest version of openmpi, which is due to be installed in the Debian FTP archive: libopenmpi-dbg_1.2.4-5_i386.deb to pool/main/o/openmpi/libopenmpi-dbg_1.2.4-5_i386.deb libopenmpi-dev_1.2.4-5_i386.deb to pool/main/o/openmpi/libopenmpi-dev_1.2.4-5_i386.deb libopenmpi1_1.2.4-5_i386.deb to pool/main/o/openmpi/libopenmpi1_1.2.4-5_i386.deb openmpi-bin_1.2.4-5_i386.deb to pool/main/o/openmpi/openmpi-bin_1.2.4-5_i386.deb openmpi-common_1.2.4-5_all.deb to pool/main/o/openmpi/openmpi-common_1.2.4-5_all.deb openmpi-doc_1.2.4-5_all.deb to pool/main/o/openmpi/openmpi-doc_1.2.4-5_all.deb openmpi_1.2.4-5.diff.gz to pool/main/o/openmpi/openmpi_1.2.4-5.diff.gz openmpi_1.2.4-5.dsc to pool/main/o/openmpi/openmpi_1.2.4-5.dsc A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [EMAIL PROTECTED], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dirk Eddelbuettel <[EMAIL PROTECTED]> (supplier of updated openmpi package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [EMAIL PROTECTED]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.7 Date: Tue, 18 Dec 2007 20:00:53 -0600 Source: openmpi Binary: openmpi-common openmpi-bin libopenmpi-dev libopenmpi1 libopenmpi-dbg openmpi-doc Architecture: source all i386 Version: 1.2.4-5 Distribution: unstable Urgency: low Maintainer: Debian OpenMPI Maintainers <[EMAIL PROTECTED]> Changed-By: Dirk Eddelbuettel <[EMAIL PROTECTED]> Description: libopenmpi-dbg - high performance message passing library -- debug library libopenmpi-dev - high performance message passing library -- header files libopenmpi1 - high performance message passing library -- shared library openmpi-bin - high performance message passing library -- binaries openmpi-common - high performance message passing library -- common files openmpi-doc - high performance message passing library -- man pages Closes: 456721 Changes: openmpi (1.2.4-5) unstable; urgency=low . [ Manuel Prinz ] * Several changes in the libopenmpi-dev package to correct the library soname links (Closes: #456721) . [ Dirk Eddelbuettel ] * Debian build and upload Files: b84d20b75e7f7a63fd3a8537361ba0a5 1066 net extra openmpi_1.2.4-5.dsc e89fd687260d263decb5b3b7b59b8499 17872 net extra openmpi_1.2.4-5.diff.gz aa128a9f746a0cacfdc336d629076388 123264 net extra openmpi-bin_1.2.4-5_i386.deb b1af20c89fa8b06b37c24c2783172b01 445556 libdevel extra libopenmpi-dev_1.2.4-5_i386.deb 54139087b452f57fa0acfa87b92aef16 1060144 libs extra libopenmpi1_1.2.4-5_i386.deb 13c75f3102735413d05bea6726c21b3b 3990660 devel extra libopenmpi-dbg_1.2.4-5_i386.deb 4852429170b3782a037aa9d6b15e2120 46680 net extra openmpi-common_1.2.4-5_all.deb 5c1139a3d641aedb4b4bce3b2f173d29 450036 doc extra openmpi-doc_1.2.4-5_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.6 (GNU/Linux) iD8DBQFHaJYKCZSR95Gw07cRAo1OAJ4jXfY/ZGpeSY/qcaesiV5bUhkpggCcDmmo YEaoSG6Hwp3mqFnNZf6G8sA= =R//v -----END PGP SIGNATURE-----
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