Your message dated Tue, 18 Mar 2008 02:32:03 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#342475: fixed in bioperl 1.5.2.102-2
has caused the Debian Bug report #342475,
regarding bioperl: unmet dependency for Bio::TreeIO::svggraph.pm
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
342475: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=342475
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: bioperl
Version: 1.4-1
Severity: normal
The perl module Bio::TreeIO::svggraph.pm uses the followgin packages:
use SVG::Graph::Data;
use SVG::Graph::Data::Tree;
use SVG::Graph::Data::Node;
Which are part of the 'SVG::Graph' module.
However, this 'SVG::Graph' module is apparently not part of the Debian
distribution.
Therefore it seems that Bio::TreeIO::svggraph.pm cannot possibly work on
a Debian system without manual installation of this unmet dependency.
Thanks,
SF
-- System Information:
Debian Release: testing/unstable
APT prefers testing
APT policy: (990, 'testing'), (500, 'stable')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.12.5
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C)
Versions of packages bioperl depends on:
ii libgd-gd2-perl 1:2.30-1 Perl module wrapper for libgd - gd
ii libio-string-perl 1.05-1 Emulate IO::File interface for in-
ii libsoap-lite-perl 0.60-2 Client and server side SOAP implem
ii perl [libstorable-perl] 5.8.7-7 Larry Wall's Practical Extraction
ii readseq 1-6 [Biology] Conversion between seque
Versions of packages bioperl recommends:
ii blast2 1:2.2.12.20050828-1 Basic Local Alignment Search Tool
ii libdbd-mysql-perl 3.0002-1 A Perl5 database interface to the
pn libdigest-md5-perl <none> (no description available)
pn libgraph-perl <none> (no description available)
ii libhtml-parser-perl 3.46-1 A collection of modules that parse
pn libio-stringy-perl <none> (no description available)
ii libnet-perl 1:1.19-1 Implementation of Internet protoco
ii libtext-shellwords-p 1.03-1 Tokenises lines of text
ii liburi-perl 1.35-1 Manipulates and accesses URI strin
ii libwww-perl 5.803-4 WWW client/server library for Perl
ii libxml-dom-perl 1.43-4 Perl module for building DOM Level
pn libxml-node-perl <none> (no description available)
ii libxml-parser-perl 2.34-4 Perl module for parsing XML files
ii libxml-perl 0.08-1 Perl modules for working with XML
ii libxml-twig-perl 3.23-1 Perl module for processing huge XM
ii libxml-writer-perl 0.600-2 Perl module for writing XML docume
ii perl [libmime-base64 5.8.7-7 Larry Wall's Practical Extraction
ii perl-modules [libnet 5.8.7-7 Core Perl modules
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: bioperl
Source-Version: 1.5.2.102-2
We believe that the bug you reported is fixed in the latest version of
bioperl, which is due to be installed in the Debian FTP archive:
bioperl_1.5.2.102-2.diff.gz
to pool/main/b/bioperl/bioperl_1.5.2.102-2.diff.gz
bioperl_1.5.2.102-2.dsc
to pool/main/b/bioperl/bioperl_1.5.2.102-2.dsc
bioperl_1.5.2.102-2_all.deb
to pool/main/b/bioperl/bioperl_1.5.2.102-2_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
David Paleino <[EMAIL PROTECTED]> (supplier of updated bioperl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Wed, 06 Feb 2008 12:01:15 +0100
Source: bioperl
Binary: bioperl
Architecture: source all
Version: 1.5.2.102-2
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: David Paleino <[EMAIL PROTECTED]>
Description:
bioperl - Perl tools for computational molecular biology
Closes: 342475 453923
Changes:
bioperl (1.5.2.102-2) unstable; urgency=low
.
[ Steffen Moeller ]
* Added reference to libsvg-graph-perl (Closes: #342475).
.
[ Nelson A. de Oliveira ]
* debian/control:
- Removed the XS- prefix from Vcs-Browser and Vcs-Svn
- Moved debhelper and quilt from Build-Depends-Indep to Build-Depends
* Updated debian/copyright
.
[ David Paleino ]
* debian/control:
- updated Recommends (libpostscript-textblock-perl won't exist -
the package will be named libpostscript-perl)
- fields wrapped at around 80 columns
- added myself to Uploaders
- added libio-string-perl to Build-Depends-Indep (Closes: #453923)
- fixed Vcs-* fields
- removed XS- from DM-Upload-Allowed
* debian/changelog:
- fixing incorrect first line (leading tab)
* debian/rules updated
* debian/dirs removed (passing arguments to dh_installdirs directly)
Files:
defcecd375e0dce58ec6ead8479e5ddc 1132 science optional bioperl_1.5.2.102-2.dsc
61a912afe494853f9c8359d61a9fe0a6 5394 science optional
bioperl_1.5.2.102-2.diff.gz
3d8cda8805cfdeb33c0a1513bc05fb37 5809278 science optional
bioperl_1.5.2.102-2_all.deb
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--- End Message ---
