Your message dated Mon, 30 Jun 2008 04:47:02 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#486959: fixed in proda 1.0-6
has caused the Debian Bug report #486959,
regarding proda: FTBFS: AlignedFragment.h:21: error: 'FILE' has not been
declared
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [EMAIL PROTECTED]
immediately.)
--
486959: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=486959
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: proda
Version: 1.0-5
Severity: serious
User: [EMAIL PROTECTED]
Usertags: qa-ftbfs-20080619 qa-ftbfs
Justification: FTBFS on i386
Hi,
During a rebuild of all packages in sid, your package failed to build on
i386.
Relevant part:
> g++ -Wall -g -O2 -c -o Main.o Main.cc
> In file included from AlignedFragment.cc:5:
> AlignedFragment.h:21: error: 'FILE' has not been declared
> AlignedFragment.cc: In constructor 'AlignedFragment::AlignedFragment(int,
> int, int, int, int, int, int*, int*)':
> AlignedFragment.cc:40: warning: deprecated conversion from string constant to
> 'char*'
> AlignedFragment.cc: In copy constructor
> 'AlignedFragment::AlignedFragment(const AlignedFragment&)':
> AlignedFragment.cc:57: warning: deprecated conversion from string constant to
> 'char*'
> AlignedFragment.cc: In member function 'AlignedFragment&
> AlignedFragment::operator=(AlignedFragment)':
> AlignedFragment.cc:74: warning: deprecated conversion from string constant to
> 'char*'
> AlignedFragment.cc: In member function 'void
> AlignedFragment::Adjust(Fragment&, Fragment&, AlignedFragment&,
> AlignedFragment&)':
> AlignedFragment.cc:127: warning: deprecated conversion from string constant
> to 'char*'
> AlignedFragment.cc:128: warning: deprecated conversion from string constant
> to 'char*'
> AlignedFragment.cc: In member function 'void AlignedFragment::Prune()':
> AlignedFragment.cc:190: error: 'memcpy' was not declared in this scope
> AlignedFragment.cc: In member function 'int
> AlignedFragment::ProcessRepeat(AVECT&, int)':
> AlignedFragment.cc:242: error: no matching function for call to
> 'AlignedFragment::Print(_IO_FILE*&)'
> AlignedFragment.h:21: note: candidates are: void AlignedFragment::Print(int*)
> AlignedFragment.cc:249: error: no matching function for call to
> 'AlignedFragment::Print(_IO_FILE*&)'
> AlignedFragment.h:21: note: candidates are: void AlignedFragment::Print(int*)
> AlignedFragment.cc: At global scope:
> AlignedFragment.cc:271: error: prototype for 'void
> AlignedFragment::Print(FILE*)' does not match any in class 'AlignedFragment'
> AlignedFragment.h:21: error: candidate is: void AlignedFragment::Print(int*)
> make[1]: *** [AlignedFragment.o] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2008/06/19
This rebuild was done with gcc 4.3 instead of gcc 4.2, because gcc 4.3
is now the default on most architectures (even if it's not the case on
i386 yet). Consequently, many failures are caused by the switch to gcc
4.3.
If you determine that this failure is caused by gcc 4.3, feel free to
downgrade this bug to 'important' if your package is only built on i386,
and this bug is specific to gcc 4.3 (i.e the package builds fine with
gcc 4.2).
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot containing a sid i386
environment. Internet was not accessible from the build systems.
--
| Lucas Nussbaum
| [EMAIL PROTECTED] http://www.lucas-nussbaum.net/ |
| jabber: [EMAIL PROTECTED] GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: proda
Source-Version: 1.0-6
We believe that the bug you reported is fixed in the latest version of
proda, which is due to be installed in the Debian FTP archive:
proda_1.0-6.diff.gz
to pool/main/p/proda/proda_1.0-6.diff.gz
proda_1.0-6.dsc
to pool/main/p/proda/proda_1.0-6.dsc
proda_1.0-6_powerpc.deb
to pool/main/p/proda/proda_1.0-6_powerpc.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[EMAIL PROTECTED]> (supplier of updated proda package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 26 Jun 2008 13:27:54 +0900
Source: proda
Binary: proda
Architecture: source powerpc
Version: 1.0-6
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Charles Plessy <[EMAIL PROTECTED]>
Description:
proda - multiple alignment of protein sequences
Closes: 486959
Changes:
proda (1.0-6) unstable; urgency=low
.
* debian/patches/*.patch: documented and forwarded upstream.
* debian/patches/03-fix_FTBFS_gcc4.3_missing_includes.patch:
Added `include <cstdio>' to `AlignedFragment.h' (Closes: #486959).
* debian/copyright:
- Updated to the latest version of the machine-readable format.
- Relicenced packaging to 'same as Proda itself'.
- Added myself to the Hall of Fame.
* debian/control: added myself as uploader.
Checksums-Sha1:
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fc39e02fdddf40c10f4140250df6255eea177564 8216 proda_1.0-6.diff.gz
748361a00de6543d669fa1d88674fbf5f7b3e09c 72864 proda_1.0-6_powerpc.deb
Checksums-Sha256:
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proda_1.0-6_powerpc.deb
Files:
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542979d9b95972e6cee62798728c1191 8216 science optional proda_1.0-6.diff.gz
b099537087d9466fa4ee4a1a698f3cf9 72864 science optional proda_1.0-6_powerpc.deb
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