Your message dated Wed, 02 Jul 2008 10:32:05 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#479323: fixed in exonerate 2.0.0-1
has caused the Debian Bug report #479323,
regarding exonerate version 2.0 is now available.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
479323: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=479323
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: exonerate
Version: 1.4.0-1
Severity: wishlist
Usertags: origin-ubuntu
Hi,
Quoting http://www.ebi.ac.uk/~guy/exonerate/:
This is a major new version. It now contains a new program, exonerate-server
which can work with exonerate in client:server mode. This holds a database
and indices in memory for much faster genome searches. Version 2.0 also
contains two new models, protein2dna:bestfit and protein2genome:bestfit,
support for non-standard genetic codes,, and user-supplied alternative splice
site data.
Many reported bugs have also been fixed.
Would be nice if we can update.
Many thanks,
Cesare
--- End Message ---
--- Begin Message ---
Source: exonerate
Source-Version: 2.0.0-1
We believe that the bug you reported is fixed in the latest version of
exonerate, which is due to be installed in the Debian FTP archive:
exonerate_2.0.0-1.diff.gz
to pool/main/e/exonerate/exonerate_2.0.0-1.diff.gz
exonerate_2.0.0-1.dsc
to pool/main/e/exonerate/exonerate_2.0.0-1.dsc
exonerate_2.0.0-1_powerpc.deb
to pool/main/e/exonerate/exonerate_2.0.0-1_powerpc.deb
exonerate_2.0.0.orig.tar.gz
to pool/main/e/exonerate/exonerate_2.0.0.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[EMAIL PROTECTED]> (supplier of updated exonerate package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 02 Jul 2008 11:24:48 +0900
Source: exonerate
Binary: exonerate
Architecture: source powerpc
Version: 2.0.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Charles Plessy <[EMAIL PROTECTED]>
Description:
exonerate - generic tool for pairwise sequence comparison
Closes: 479323
Changes:
exonerate (2.0.0-1) unstable; urgency=low
.
[ David Paleino ]
* Updated to Standards-Version 3.8.0 (no changes needed)
.
[ Charles Plessy ]
* New upstream release (Closes: #479323)
Quoting the upstream changelog:
o Modified exonerate to work in Client:Server mode
o Fixed --refine to work with SDP alignments
o Disabled codegen warnings from bootstrapper during compilation
o Added --geneticcode option for using alternative genetic codes
o Added --splice5 and --splice3 to allow alternative splice site PSSMs
o Fixed several bugs when scanning query sequences (eg. --forcescan query)
o Fixed to report query on forward strand whenever possible.
o Fixed --ryo sequence dumping with --bestn
o Fixed a bug with missing seeds when using --annotation
o Changed license to GPLv3
o Added protein2dna:bestfit and protein2genome:bestfit models
(works with exhaustive alignment only)
* Updated my email address.
* debian/control:
- Building on glib-2.0 instead of 1.2.
- Added a build dependancy on libreadline5-dev.
- Augmented the long description and changed the short.
- Added a build dependency on CDBS.
* debian/copyright made machine-readable.
* debian/rules switched to cdbs.
* debian/dirs: removed.
Checksums-Sha1:
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0208c6201f22fc6b37792a8205a5255c97acb653 501817 exonerate_2.0.0.orig.tar.gz
dfcb976deebd95e31252c82fd68e786b6432d703 3810 exonerate_2.0.0-1.diff.gz
80964391928312b07b9b3f4fdc69424bc64a29fd 3198732 exonerate_2.0.0-1_powerpc.deb
Checksums-Sha256:
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exonerate_2.0.0-1.dsc
57ef5d98ce5f9dbc3b21c0e7017b1832d142c36f342ed8d55bbe593e1bdb3a9c 501817
exonerate_2.0.0.orig.tar.gz
2dc17530908c782ecc30f8a1d36621fd912f01812b5ff4be912325a3068b6aec 3810
exonerate_2.0.0-1.diff.gz
dbaca20d46fa62aff3cd0c0637dafaad3de8326368f02876cd3816646a0c1bd5 3198732
exonerate_2.0.0-1_powerpc.deb
Files:
a9b68923a4be57e3eb0991ea45e9fd84 1368 science optional exonerate_2.0.0-1.dsc
d88202fce0539b1b236ca521a160c3ef 501817 science optional
exonerate_2.0.0.orig.tar.gz
77cc703c6836b9ad9e4c7e06a626d4e0 3810 science optional
exonerate_2.0.0-1.diff.gz
6d1fa6ca5a483f744f26a3455494e2f1 3198732 science optional
exonerate_2.0.0-1_powerpc.deb
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