Your message dated Sun, 19 Apr 2009 19:08:01 +0000
with message-id <[email protected]>
and subject line Bug#506960: fixed in bibutils 4.1-1
has caused the Debian Bug report #506960,
regarding bibutils: Wrong SGML tag name for the Medline format
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
506960: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=506960
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: bibutils
Version: 3.40-4
Severity: normal
Tags: patch upstream
According to the NCBI standard Medline format [1], the first name of the
authors are specified by the <FirstName> SGML tag. The med2xml program does
not comply with the specification, because the code in lib/medlin.c wrongly
uses the <ForeName> tag.
In the debdiff file attached below you will find the quilt patch
debian/patches/medline-author-firstname.patch that fixes the problem.
Please, apply it to the Debian package and feel free to forward it to the
upstream author.
Last note: I checked the code for release 3.43 of bibutils [2] and the bug is
still present.
[1] http://xml.coverpages.org/ncbiPubFormat.html
[2] http://www.scripps.edu/~cdputnam/software/bibutils/bibutils_3.43_src.tgz
Thanks,
Rafael Laboissiere
-- System Information:
Debian Release: lenny/sid
APT prefers unstable
APT policy: (650, 'unstable'), (600, 'experimental')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/dash
Kernel: Linux 2.6.18-3-686
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US (charmap=UTF-8) (ignored: LC_ALL set
to en_US.UTF-8)
Versions of packages bibutils depends on:
ii libbibutils0 3.40-4 bibliography file converter, share
ii libc6 2.7-3 GNU C Library: Shared libraries
bibutils recommends no packages.
-- no debconf information
diff -u bibutils-3.40/debian/changelog bibutils-3.40/debian/changelog
--- bibutils-3.40/debian/changelog
+++ bibutils-3.40/debian/changelog
@@ -1,3 +1,11 @@
+bibutils (3.40-4.1) UNRELEASED; urgency=low
+
+ * debian/patches/medline-author-firstname.patch: Use FirstName instead
+ of ForeName tag in the Author record, which is the correct SGML tag
+ name according to the NCBI Medline format specification.
+
+ -- Rafael Laboissiere <[email protected]> Wed, 26 Nov 2008 13:34:04 +0100
+
bibutils (3.40-4) unstable; urgency=low
* added reftypes.h (Closes: #477654)
diff -u bibutils-3.40/debian/patches/series bibutils-3.40/debian/patches/series
--- bibutils-3.40/debian/patches/series
+++ bibutils-3.40/debian/patches/series
@@ -6,0 +7 @@
+medline-author-firstname.patch
only in patch2:
unchanged:
--- bibutils-3.40.orig/debian/patches/medline-author-firstname.patch
+++ bibutils-3.40/debian/patches/medline-author-firstname.patch
@@ -0,0 +1,27 @@
+Use FirstName instead of ForeName tag in the Author record, which is the
+correct SGML tag name according to the NCBI Medline format specification
+(see http://xml.coverpages.org/ncbiPubFormat.html).
+
+ -- Rafael Laboissiere <[email protected]> Wed, 26 Nov 2008 13:34:04 +0100
+
+--- a/lib/medin.c
++++ b/lib/medin.c
+@@ -201,8 +201,7 @@
+ /* <AuthorList CompleteYN="Y">
+ * <Author>
+ * <LastName>Barondeau</LastName>
+- * <ForeName>David P</ForeName>
+- * <Initials>DP</Initials>
++ * <FirstName>David P</FirstName>
+ * </Author>
+ * </AuthorList>
+ */
+@@ -216,7 +215,7 @@
+ newstr_prepend( name, node->value->data );
+ }
+ else newstr_strcat( name, node->value->data );
+- } else if ( xml_tagexact( node, "ForeName" ) ) {
++ } else if ( xml_tagexact( node, "FirstName" ) ) {
+ p = node->value->data;
+ while ( p && *p ) {
+ if ( name->len ) newstr_addchar( name, '|' );
--- End Message ---
--- Begin Message ---
Source: bibutils
Source-Version: 4.1-1
We believe that the bug you reported is fixed in the latest version of
bibutils, which is due to be installed in the Debian FTP archive:
bibutils_4.1-1.diff.gz
to pool/main/b/bibutils/bibutils_4.1-1.diff.gz
bibutils_4.1-1.dsc
to pool/main/b/bibutils/bibutils_4.1-1.dsc
bibutils_4.1-1_i386.deb
to pool/main/b/bibutils/bibutils_4.1-1_i386.deb
bibutils_4.1.orig.tar.gz
to pool/main/b/bibutils/bibutils_4.1.orig.tar.gz
libbibutils-dev_4.1-1_i386.deb
to pool/main/b/bibutils/libbibutils-dev_4.1-1_i386.deb
libbibutils1_4.1-1_i386.deb
to pool/main/b/bibutils/libbibutils1_4.1-1_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
David Bremner <[email protected]> (supplier of updated bibutils package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 15 Mar 2009 12:48:29 -0300
Source: bibutils
Binary: bibutils libbibutils-dev libbibutils1
Architecture: source i386
Version: 4.1-1
Distribution: unstable
Urgency: low
Maintainer: Yaroslav Halchenko <[email protected]>
Changed-By: David Bremner <[email protected]>
Description:
bibutils - interconvert various bibliographic data formats
libbibutils-dev - bibliography file converter, development kit
libbibutils1 - bibliography file converter, shared library
Closes: 485243 506960
Changes:
bibutils (4.1-1) unstable; urgency=low
.
* New Upstream Version (Closes: #506960)
* Convert to topgit (Closes: #485243)
* Change maintainer to [email protected]
* Update Vcs-Git and Vcs-Browser
* Converted packaging to topgit
* Upgraded to standards version 3.8.1 (added debian/README.source)
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