Your message dated Wed, 15 Jul 2009 15:34:51 +0000
with message-id <[email protected]>
and subject line Bug#530112: fixed in emboss 6.1.0-1
has caused the Debian Bug report #530112,
regarding jemboss: bashism in /bin/sh script
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
530112: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=530112
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: jemboss
Severity: important
Version: 6.0.1-11
User: [email protected]
Usertags: goal-dash
Hello maintainer,
While performing an archive wide checkbashisms (from the 'devscripts' package)
check I've found your package containing a /bin/sh script making use
of a bashism.
checkbashisms' output:
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 607 (should
> be read [-r] variable):
> read
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 646 (should
> be read [-r] variable):
> read
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 687 (should
> be read [-r] variable):
> read
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 1229
> (unsafe echo with backslash):
> echo "./configure --with-java=$JAVA_INCLUDE \\"
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 1230
> (unsafe echo with backslash):
> echo " --with-javaos=$JAVA_INCLUDE_OS \\"
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 1231
> (unsafe echo with backslash):
> echo " --with-thread=$PLATFORM \\"
> possible bashism in
> ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh line 1232
> (unsafe echo with backslash):
> echo " --prefix=$EMBOSS_INSTALL \\"
Not using bash (or a Debian Policy conformant shell interpreter which doesn't
provide such an extra feature) as /bin/sh is likely to lead to errors or
unexpected behaviours.
Please be aware that although bash is currently the default /bin/sh there was
a release goal for Lenny to make dash the default /bin/sh[1], and has been
proposed for squeeze as well[2].
If you want more information about dash as /bin/sh, you can read:
http://lists.debian.org/debian-release/2008/01/msg00189.html
For more information supporting this goal please refer to Debian Policy,
section 10.4, at:
http://www.debian.org/doc/debian-policy/ch-files.html#s-scripts
Hints about how to fix bashisms:
Sometimes these bugs are already fixed in Ubuntu, look at the PTS.
If not already fixed you can read:
https://wiki.ubuntu.com/DashAsBinSh
If you still don't know how to fix the bashisms don't hesitate to reply to
this email, or tag the bug as 'help'.
[1]http://release.debian.org/lenny/goals.txt
[2]http://lists.debian.org/debian-release/2009/04/msg00133.html
Thank you,
Raphael Geissert
--- End Message ---
--- Begin Message ---
Source: emboss
Source-Version: 6.1.0-1
We believe that the bug you reported is fixed in the latest version of
emboss, which is due to be installed in the Debian FTP archive:
emboss-data_6.1.0-1_all.deb
to pool/main/e/emboss/emboss-data_6.1.0-1_all.deb
emboss-doc_6.1.0-1_all.deb
to pool/main/e/emboss/emboss-doc_6.1.0-1_all.deb
emboss-lib_6.1.0-1_amd64.deb
to pool/main/e/emboss/emboss-lib_6.1.0-1_amd64.deb
emboss-test_6.1.0-1_all.deb
to pool/main/e/emboss/emboss-test_6.1.0-1_all.deb
emboss_6.1.0-1.diff.gz
to pool/main/e/emboss/emboss_6.1.0-1.diff.gz
emboss_6.1.0-1.dsc
to pool/main/e/emboss/emboss_6.1.0-1.dsc
emboss_6.1.0-1_amd64.deb
to pool/main/e/emboss/emboss_6.1.0-1_amd64.deb
emboss_6.1.0.orig.tar.gz
to pool/main/e/emboss/emboss_6.1.0.orig.tar.gz
jemboss_6.1.0-1_all.deb
to pool/main/e/emboss/jemboss_6.1.0-1_all.deb
libajax6-dev_6.1.0-1_amd64.deb
to pool/main/e/emboss/libajax6-dev_6.1.0-1_amd64.deb
libajax6_6.1.0-1_amd64.deb
to pool/main/e/emboss/libajax6_6.1.0-1_amd64.deb
libnucleus6-dev_6.1.0-1_amd64.deb
to pool/main/e/emboss/libnucleus6-dev_6.1.0-1_amd64.deb
libnucleus6_6.1.0-1_amd64.deb
to pool/main/e/emboss/libnucleus6_6.1.0-1_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated emboss package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 15 Jul 2009 23:15:26 +0900
Source: emboss
Binary: emboss emboss-data emboss-doc emboss-test emboss-lib jemboss libajax6
libajax6-dev libnucleus6 libnucleus6-dev
Architecture: source all amd64
Version: 6.1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<[email protected]>
Changed-By: Charles Plessy <[email protected]>
Description:
emboss - the european molecular biology open software suite
emboss-data - data files for the EMBOSS package
emboss-doc - documentation for EMBOSS
emboss-lib - EMBOSS Libraries
emboss-test - test files for the EMBOSS package
jemboss - graphical user interface to EMBOSS
libajax6 - EMBOSS library for commands
libajax6-dev - development files for libajax
libnucleus6 - EMBOSS library for molecular sequence analysis
libnucleus6-dev - development files for libnucleus
Closes: 530112
Changes:
emboss (6.1.0-1) unstable; urgency=low
.
* New upstream relase (Closes: #530112).
* Dropped patch against previous release.
* Created or refreshed the manpages.
Checksums-Sha1:
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5c69f072c6d2640e4415e13280a64f4069f5826d 878606 libajax6_6.1.0-1_amd64.deb
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9b783a2e8f4cefeed203c4392019a512718226c4 210322 libnucleus6_6.1.0-1_amd64.deb
3f8712e8966d296e58a6578a1e24641b7363ee0d 227788
libnucleus6-dev_6.1.0-1_amd64.deb
Checksums-Sha256:
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emboss_6.1.0-1.dsc
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emboss_6.1.0.orig.tar.gz
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emboss_6.1.0-1.diff.gz
02b9c099e95d35facf4fd8011fa729979a79d36e9d621c4990ac32ae3210a212 832158
emboss-data_6.1.0-1_all.deb
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emboss-doc_6.1.0-1_all.deb
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emboss-test_6.1.0-1_all.deb
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jemboss_6.1.0-1_all.deb
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emboss_6.1.0-1_amd64.deb
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emboss-lib_6.1.0-1_amd64.deb
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libnucleus6_6.1.0-1_amd64.deb
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libnucleus6-dev_6.1.0-1_amd64.deb
Files:
52e2a9d0761134c5b2473da8648c17d2 1614 science optional emboss_6.1.0-1.dsc
6c5163c571bc0be94d64420ce0d71824 21968220 science optional
emboss_6.1.0.orig.tar.gz
11d818e334b30b285042e5a1f7b18ad7 252853 science optional emboss_6.1.0-1.diff.gz
702f41d923efa23ca205d6a3302ceef7 832158 science optional
emboss-data_6.1.0-1_all.deb
fcfc136ce7989fc421058b50ce8d608c 5282830 doc optional
emboss-doc_6.1.0-1_all.deb
67d0cdf487f22c78af44316abe0c9a6f 5831532 misc optional
emboss-test_6.1.0-1_all.deb
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jemboss_6.1.0-1_all.deb
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emboss_6.1.0-1_amd64.deb
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emboss-lib_6.1.0-1_amd64.deb
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libajax6_6.1.0-1_amd64.deb
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libajax6-dev_6.1.0-1_amd64.deb
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libnucleus6_6.1.0-1_amd64.deb
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--- End Message ---
