Your message dated Mon, 24 Aug 2009 11:18:44 +0000
with message-id <[email protected]>
and subject line Bug#543236: fixed in python-biopython 1.51final-2
has caused the Debian Bug report #543236,
regarding Make package ready for python 2.6
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
543236: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=543236
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python-biopython
Version: 1.51final-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: origin-ubuntu karmic ubuntu-patch
Hello dear maintainer,
In Ubuntu, we've applied the attached patch to achieve the following:
* Python 2.6 transition.
We thought you might be interested in doing the same.
-- System Information:
Debian Release: lenny/sid
APT prefers hardy-updates
APT policy: (500, 'hardy-updates'), (500, 'hardy-security'), (500,
'hardy-proposed'), (500, 'hardy')
Architecture: i386 (i686)
Kernel: Linux 2.6.24-24-generic (SMP w/2 CPU cores)
Locale: LANG=en_IN, LC_CTYPE=en_IN (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
diff -u python-biopython-1.51final/debian/python-biopython.files
python-biopython-1.51final/debian/python-biopython.files
--- python-biopython-1.51final/debian/python-biopython.files
+++ python-biopython-1.51final/debian/python-biopython.files
@@ -1 +1 @@
-usr/lib/python*/site-packages/Bio
+usr/lib/python*/*-packages/Bio
diff -u python-biopython-1.51final/debian/rules
python-biopython-1.51final/debian/rules
--- python-biopython-1.51final/debian/rules
+++ python-biopython-1.51final/debian/rules
@@ -18,13 +18,13 @@
dh_testdir
dh_testroot
- yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp
+ yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp
--install-layout=deb
# <bugfix>
- chmod 644
debian/python$*-tmp/usr/lib/python$*/site-packages/Bio/EUtils/DTDs/*dtd
- chmod 644
debian/python$*-tmp/usr/lib/python$*/site-packages/Bio/Entrez/DTDs/*dtd
+ chmod 644
debian/python$*-tmp/usr/lib/python$*/*-packages/Bio/EUtils/DTDs/*dtd
+ chmod 644
debian/python$*-tmp/usr/lib/python$*/*-packages/Bio/Entrez/DTDs/*dtd
- for i in `find ./debian/python$*-tmp/usr/lib/python$*/site-packages
-name "*.py"`; do \
+ for i in `find ./debian/python$*-tmp/usr/lib/python$*/*-packages -name
"*.py"`; do \
sed -ir "s/^#\!\/usr\/bin\/env python\(2\.[234]\)\?$$//" $$i;
\
sed -ir "s/^#\![ ]*\/usr\/bin\/python[ ]*\(-OO\)\?\(-i\)\?$$//"
$$i; \
$(RM) $$i\r;
\
diff -u python-biopython-1.51final/debian/python-biopython-sql.files
python-biopython-1.51final/debian/python-biopython-sql.files
--- python-biopython-1.51final/debian/python-biopython-sql.files
+++ python-biopython-1.51final/debian/python-biopython-sql.files
@@ -1 +1 @@
-usr/lib/python*/site-packages/BioSQL
+usr/lib/python*/*-packages/BioSQL
--- End Message ---
--- Begin Message ---
Source: python-biopython
Source-Version: 1.51final-2
We believe that the bug you reported is fixed in the latest version of
python-biopython, which is due to be installed in the Debian FTP archive:
python-biopython-doc_1.51final-2_all.deb
to pool/main/p/python-biopython/python-biopython-doc_1.51final-2_all.deb
python-biopython-sql_1.51final-2_all.deb
to pool/main/p/python-biopython/python-biopython-sql_1.51final-2_all.deb
python-biopython_1.51final-2.diff.gz
to pool/main/p/python-biopython/python-biopython_1.51final-2.diff.gz
python-biopython_1.51final-2.dsc
to pool/main/p/python-biopython/python-biopython_1.51final-2.dsc
python-biopython_1.51final-2_i386.deb
to pool/main/p/python-biopython/python-biopython_1.51final-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Philipp Benner <[email protected]> (supplier of updated python-biopython
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 24 Aug 2009 09:29:27 +0000
Source: python-biopython
Binary: python-biopython python-biopython-doc python-biopython-sql
Architecture: source all i386
Version: 1.51final-2
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<[email protected]>
Changed-By: Philipp Benner <[email protected]>
Description:
python-biopython - Python library for bioinformatics
python-biopython-doc - Documentation for the Biopython library
python-biopython-sql - Biopython support for the BioSQL database schema
Closes: 543236
Changes:
python-biopython (1.51final-2) unstable; urgency=low
.
* Merged patch from ubuntu to make the package ready for
python2.6 (Closes: #543236).
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