Your message dated Mon, 31 Aug 2009 13:47:21 +0000
with message-id <[email protected]>
and subject line Bug#542879: fixed in theseus 1.4.3-1
has caused the Debian Bug report #542879,
regarding theseus: FTBFS on GNU/kFreeBSD
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
542879: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=542879
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: theseus
Version: 1.3.9-1
Severity: important
Tags: patch
User: [email protected]
Usertags: kfreebsd
Hi,
your package FTBFS on GNU/kFreeBSD because of a missing include. The
attached patch fixes this problem.
Thanks for considering.
Mraw,
KiBi.
--- a/theseus.h
+++ b/theseus.h
@@ -51,7 +51,7 @@
#include <string.h>
#include <stdio.h>
#include <unistd.h>
-#ifdef __linux__
+#if defined(__linux__) || defined(__GLIBC__)
#include <getopt.h>
#endif
#include <ctype.h>
--- End Message ---
--- Begin Message ---
Source: theseus
Source-Version: 1.4.3-1
We believe that the bug you reported is fixed in the latest version of
theseus, which is due to be installed in the Debian FTP archive:
theseus_1.4.3-1.diff.gz
to pool/main/t/theseus/theseus_1.4.3-1.diff.gz
theseus_1.4.3-1.dsc
to pool/main/t/theseus/theseus_1.4.3-1.dsc
theseus_1.4.3-1_i386.deb
to pool/main/t/theseus/theseus_1.4.3-1_i386.deb
theseus_1.4.3.orig.tar.gz
to pool/main/t/theseus/theseus_1.4.3.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated theseus package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 31 Aug 2009 14:50:19 +0200
Source: theseus
Binary: theseus
Architecture: source i386
Version: 1.4.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
theseus - superimpose macromolecules using maximum likelihood
Closes: 534630 542879
Changes:
theseus (1.4.3-1) unstable; urgency=low
.
[Andreas Tille]
* New upstream version
Closes: #534630
* debian/control
- Added myself to uploaders
- debhelper 7
- Build-Depends: libtool
- Standards-Version: 3.8.3 (no changes needed)
* Switched to quilt (affects debian/patches/*, debian/control,
debian/rules)
* Added Suggests: clustlaw, mafft, t-coffee, kalign, dialign
because these are called in theseus_align
* Use debian/{docs,manpages, examples} instead of arguments of
the debhelper installers to enable short rules file
* Re-enabled patch for theseus_align and do not tweak upstream
tarball just to s?usr/local/bin?usr/bin?
* debian/patches/200-make.inc.patch: Use ar directly to to avoid
problems with libtool, drop -arch command line options to gcc
which let compilation fail
* debian/README.Debian: Removed paragraph about theseus_align
because this is now shipped in upstream tarball
* debian/patches/10_kbsd.patch: fix the FTBFS problem reported by
Cyril Brulebois <[email protected]> (thanks to Cyril for the patch)
Closes: #542879
.
[Morten Kjeldgaard]
* Fix FTBFS on certain platforms that lack the Atlas libraries
by using lapack-dev in Build-Depends. This will pull in Atlas
on the relevant platforms, otherwise not.
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7abe3f1537f7b400b8b92bfcbea8ad73492a4601 8439 theseus_1.4.3-1.diff.gz
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Checksums-Sha256:
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theseus_1.4.3-1.diff.gz
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theseus_1.4.3-1_i386.deb
Files:
64eb72ac9c101c21a20fb416eec3eeb8 1327 science optional theseus_1.4.3-1.dsc
817c2006056ded4cddbd55877553c534 1351504 science optional
theseus_1.4.3.orig.tar.gz
3314d9018445d67d29df53605d83a4dc 8439 science optional theseus_1.4.3-1.diff.gz
eaf7691f747bb841dd9fa838d82fcbd3 1148004 science optional
theseus_1.4.3-1_i386.deb
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