Your message dated Sun, 27 Dec 2009 18:17:26 +0000
with message-id <[email protected]>
and subject line Bug#560412: fixed in pymol 1.2r2-1
has caused the Debian Bug report #560412,
regarding png does not work as expected anymore with batch mode
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
560412: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=560412
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: pymol
Version: 1.2r1-3
Severity: important
Hello,
The png command (or the -g command-line argument) does not work
anymore when used in batch mode.
Let's say I have a file structured this way:
# (drawing commands)
ray 200,200
png save.png
If I launch it using
pymol -d '@ file.pml'
I get a nice save.png file of a 200x200 ray-traced picture of my
nice protein. However, if I run:
pymol -c -d '@ file.pml'
save.png is 640x480 and is rebuilt at the time of the png
command. That is really painful, since it stops me from using all my
pymol scripts (I can't afford to run them all by hand).
I guess the graphics context is wrong somehow in command-line mode,
but I don't know more than this.
It was working fine with the 1.1 version.
Many thanks,
Vincent
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable'), (1,
'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.31-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_GB, LC_CTYPE=en_GB (charmap=ISO-8859-1)
Shell: /bin/sh linked to /bin/dash
Versions of packages pymol depends on:
ii freeglut3 2.4.0-8 OpenGL Utility Toolkit
ii libc6 2.10.2-2 GNU C Library: Shared libraries
ii libfreetype6 2.3.11-1 FreeType 2 font engine, shared lib
ii libgcc1 1:4.4.2-3 GCC support library
ii libgl1-mesa-glx [libgl 7.6.1~rc2-1 A free implementation of the OpenG
ii libglu1-mesa [libglu1] 7.6.1~rc2-1 The OpenGL utility library (GLU)
ii libpng12-0 1.2.41-1 PNG library - runtime
ii libstdc++6 4.4.2-3 The GNU Standard C++ Library v3
ii python 2.5.4-2 An interactive high-level object-o
ii python-pmw 1.3.2-3 Pmw -- Python MegaWidgets
ii python-support 1.0.6 automated rebuilding support for P
ii python-tk 2.5.2-1.1 Tkinter - Writing Tk applications
ii zlib1g 1:1.2.3.3.dfsg-15 compression library - runtime
Versions of packages pymol recommends:
ii apbs 1.1.0-1 Adaptive Poisson Boltzmann Solver
pymol suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: pymol
Source-Version: 1.2r2-1
We believe that the bug you reported is fixed in the latest version of
pymol, which is due to be installed in the Debian FTP archive:
pymol_1.2r2-1.diff.gz
to main/p/pymol/pymol_1.2r2-1.diff.gz
pymol_1.2r2-1.dsc
to main/p/pymol/pymol_1.2r2-1.dsc
pymol_1.2r2-1_i386.deb
to main/p/pymol/pymol_1.2r2-1_i386.deb
pymol_1.2r2.orig.tar.gz
to main/p/pymol/pymol_1.2r2.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <[email protected]> (supplier of updated pymol package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: RIPEMD160
Format: 1.8
Date: Sun, 27 Dec 2009 18:55:26 +0100
Source: pymol
Binary: pymol
Architecture: source i386
Version: 1.2r2-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <[email protected]>
Changed-By: Michael Banck <[email protected]>
Description:
pymol - Molecular Graphics System
Closes: 556878 560412
Changes:
pymol (1.2r2-1) unstable; urgency=low
.
* New upstream release. This upload is dedicated to the pymol founder and
lead developer Warren DeLano, who passed away on November 3rd, 2009.
.
[ Daniel Leidert (dale) ]
* debian/patches/18_enable_gl_shaders.dpatch: Refreshed.
.
[ Michael Banck ]
* debian/patches/21_fix_png_batch_mode.dpatch: New patch, fixes PNG
generation in batch mode, by Vincent Fourmond (closes: #560412).
* debian/patches/22_fix_pymol_import.dpatch: New patch, fixes importing of
pymol module from python (closes: #556878).
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