Your message dated Thu, 24 Jun 2010 18:51:05 -0400
with message-id <1277419865.4724.991.ca...@workhorse>
and subject line Builds succeeding, bug closed
has caused the Debian Bug report #583015,
regarding elmerfem: FTBFS: SParIterComm.f90:127: Error: Can't open included
file 'mpif.h'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
583015: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=583015
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: elmerfem
Version: 5.5.0.svn.4458.dfsg-2
Severity: serious
Tags: squeeze sid
User: [email protected]
Usertags: qa-ftbfs-20100524 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> gcc -g -O2
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I/usr/include -L. -L/usr/lib -o SC2Elmer
> SC2Elmer.o -L. -ldl
> -L/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/lib
> -L/usr/lib -lm
> cp mpif_stub.h mpif
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> NavierStokes.src > NavierStokes.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> DefUtils.src > DefUtils.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> PElementMaps.src > PElementMaps.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> Types.src > Types.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> iso_varying_string.src > iso_varying_string.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c iso_varying_string.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> Messages.src > Messages.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c Messages.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c Types.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c PElementMaps.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> Adaptive.src > Adaptive.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> CRSMatrix.src > CRSMatrix.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> GeneralUtils.src > GeneralUtils.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c GeneralUtils.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c CRSMatrix.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> ModelDescription.src > ModelDescription.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> MeshUtils.src > MeshUtils.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> PElementBase.src > PElementBase.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c PElementBase.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> ParallelUtils.src > ParallelUtils.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> SParIterSolver.src > SParIterSolver.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> SParIterGlobals.src > SParIterGlobals.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c SParIterGlobals.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> Lists.src > Lists.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> CoordinateSystems.src > CoordinateSystems.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c CoordinateSystems.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> Interpolation.src > Interpolation.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> ElementDescription.src > ElementDescription.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> Integration.src > Integration.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> LinearAlgebra.src > LinearAlgebra.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c LinearAlgebra.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c Integration.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c ElementDescription.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c Interpolation.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c Lists.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> IterSolve.src > IterSolve.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> BandMatrix.src > BandMatrix.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c BandMatrix.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> IterativeMethods.src > IterativeMethods.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c IterativeMethods.f90
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c IterSolve.f90
> /lib/cpp
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK
> SParIterComm.src > SParIterComm.f90
> SParIterComm.f90:127: Error: Can't open included file 'mpif.h'
> gfortran
> -I/build/user-elmerfem_5.5.0.svn.4458.dfsg-2-amd64-l2hBGk/elmerfem-5.5.0.svn.4458.dfsg/debian/tmp/usr/include
> -fPIC -m64 -fPIC -fPIC -I. -Ibinio -c SParIterComm.f90
> SParIterComm.f90:4195.34:
>
> CALL MPI_BARRIER( MPI_COMM_WORLD, ierr )
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> SParIterComm.f90:4145.55:
>
> CALL MPI_ALLREDUCE( dsum, dres, 1, MPI_DOUBLE_COMPLEX, &
> 1
> Error: Symbol 'mpi_double_complex' at (1) has no IMPLICIT type
> SParIterComm.f90:4132.36:
>
> INTEGER, DIMENSION(MPI_STATUS_SIZE) :: status
> 1
> Error: Symbol 'mpi_status_size' at (1) has no IMPLICIT type
> SParIterComm.f90:4146.19:
>
> MPI_SUM, ParEnv % ActiveComm, ierr )
> 1
> Error: Symbol 'mpi_sum' at (1) has no IMPLICIT type
> SParIterComm.f90:4036.60:
>
> CALL MPI_ALLREDUCE( ssum, tsum, 1, MPI_DOUBLE_PRECISION, &
> 1
> Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
> SParIterComm.f90:4043.19:
>
> MPI_MAX, ParEnv % ActiveComm, ierr )
> 1
> Error: Symbol 'mpi_max' at (1) has no IMPLICIT type
> SParIterComm.f90:4040.19:
>
> MPI_MIN, ParEnv % ActiveComm, ierr )
> 1
> Error: Symbol 'mpi_min' at (1) has no IMPLICIT type
> SParIterComm.f90:4037.19:
>
> MPI_SUM, ParEnv % ActiveComm, ierr )
> 1
> Error: Symbol 'mpi_sum' at (1) has no IMPLICIT type
> SParIterComm.f90:3984.36:
>
> integer, dimension(MPI_STATUS_SIZE) :: status
> 1
> Error: Symbol 'mpi_status_size' at (1) has no IMPLICIT type
> SParIterComm.f90:3958.37:
>
> i, 6001, MPI_COMM_WORLD, requests(ni), Ierr)
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> SParIterComm.f90:3957.70:
>
> CALL MPI_iRECV( buffer(ni) % rbuf,sizes(ni),MPI_DOUBLE_PRECISION, &
> 1
> Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
> SParIterComm.f90:3912.32:
>
> 6000, MPI_COMM_WORLD, status, ierr )
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> SParIterComm.f90:3911.42:
>
> CALL MPI_RECV( Veclen, 1, MPI_INTEGER, neigh(i), &
> 1
> Error: Symbol 'mpi_integer' at (1) has no IMPLICIT type
> SParIterComm.f90:3899.36:
>
> integer, dimension(MPI_STATUS_SIZE) :: status
> 1
> Error: Symbol 'mpi_status_size' at (1) has no IMPLICIT type
> SParIterComm.f90:3877.47:
>
> neigh(nj), 6001, MPI_COMM_WORLD, Ierr )
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> SParIterComm.f90:3876.67:
>
> CALL MPI_BSEND( VecL(nj) % rbuf, L(nj), MPI_DOUBLE_PRECISION, &
> 1
> Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
> SParIterComm.f90:3778.29:
>
> MPI_COMM_WORLD, ierr )
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> SParIterComm.f90:3777.41:
>
> CALL MPI_BSEND( L(nj), 1, MPI_INTEGER, j, 6000, &
> 1
> Error: Symbol 'mpi_integer' at (1) has no IMPLICIT type
> SParIterComm.f90:3711.58:
>
> CALL MPI_RECV( VecLen, 1, MPI_INTEGER, MPI_ANY_SOURCE, &
> 1
> Error: Symbol 'mpi_any_source' at (1) has no IMPLICIT type
> SParIterComm.f90:3712.34:
>
> 6000, MPI_COMM_WORLD, status, ierr )
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> SParIterComm.f90:3723.61:
>
> CALL MPI_RECV( DPBuffer, VecLen, MPI_DOUBLE_PRECISION, &
> 1
> Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
> SParIterComm.f90:3711.42:
>
> CALL MPI_RECV( VecLen, 1, MPI_INTEGER, MPI_ANY_SOURCE, &
> 1
> Error: Symbol 'mpi_integer' at (1) has no IMPLICIT type
> SParIterComm.f90:3715.33:
>
> sproc = status(MPI_SOURCE)
> 1
> Error: Symbol 'mpi_source' at (1) has no IMPLICIT type
> SParIterComm.f90:3701.36:
>
> integer, dimension(MPI_STATUS_SIZE) :: status
> 1
> Error: Symbol 'mpi_status_size' at (1) has no IMPLICIT type
> SParIterComm.f90:3666.30:
>
> MPI_COMM_WORLD, IERR )
> 1
> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type
> Fatal Error: Error count reached limit of 25.
> make[4]: *** [SParIterComm.o] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2010/05/24/elmerfem_5.5.0.svn.4458.dfsg-2_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| [email protected] http://www.lucas-nussbaum.net/ |
| jabber: [email protected] GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Version 5.5.0.svn.4458.dfsg-2.1 (uploaded yesterday, after this bug was
filed) is building successfully for all architectures so far, so this
bug can be closed.
-Adam
--
GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6
Engineering consulting with open source tools
http://www.opennovation.com/
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--- End Message ---
