Your message dated Wed, 02 Mar 2011 05:17:23 +0000
with message-id <[email protected]>
and subject line Bug#616025: fixed in samtools 0.1.13-1
has caused the Debian Bug report #616025,
regarding distributed bcftools(1) is actually samtools(1)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
616025: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=616025
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: samtools
Version: 0.12a-1
Severity: normal
bcftools(1) has a real manpage which is distributed upstream in
bcftools/bcftools.1, and bcftools.1.gz should not be a symlink to
samtools, as they are entirely separate programs with totally separate
options.
Don Armstrong
--
They say when you embark on a journey
of revenge
dig two graves.
They underestimate me.
-- a softer world #560
http://www.asofterworld.com/index.php?id=560
http://www.donarmstrong.com http://rzlab.ucr.edu
--- End Message ---
--- Begin Message ---
Source: samtools
Source-Version: 0.1.13-1
We believe that the bug you reported is fixed in the latest version of
samtools, which is due to be installed in the Debian FTP archive:
libbam-dev_0.1.13-1_amd64.deb
to main/s/samtools/libbam-dev_0.1.13-1_amd64.deb
samtools_0.1.13-1.debian.tar.gz
to main/s/samtools/samtools_0.1.13-1.debian.tar.gz
samtools_0.1.13-1.dsc
to main/s/samtools/samtools_0.1.13-1.dsc
samtools_0.1.13-1_amd64.deb
to main/s/samtools/samtools_0.1.13-1_amd64.deb
samtools_0.1.13.orig.tar.bz2
to main/s/samtools/samtools_0.1.13.orig.tar.bz2
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated samtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 02 Mar 2011 13:54:34 +0900
Source: samtools
Binary: samtools libbam-dev
Architecture: source amd64
Version: 0.1.13-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Charles Plessy <[email protected]>
Description:
libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
samtools - processing sequence alignments in SAM and BAM formats
Closes: 606004 616025
Changes:
samtools (0.1.13-1) unstable; urgency=low
.
* New upstream release:
- backward incompatible with VCF/BCF generated by samtools older
than r921 inclusive (0.1.12a is r862);
- buildable with with ld --as-needed (Closes: #606004);
- the helper tool bcf-fix.pl was removed.
* Install the manual page of bcftools (debian/rules,
debian/samtools.manpages). Closes: #616025.
Checksums-Sha1:
14cb9ff4205c0908b2593fd41212dfbce70204a5 1939 samtools_0.1.13-1.dsc
8ab22994c9e899648a8731cdfd6b1e4b1ed8773e 365042 samtools_0.1.13.orig.tar.bz2
90988bd1dbae817e970401941ec0f59697b978b4 6523 samtools_0.1.13-1.debian.tar.gz
b94d8b20ee82a855439225995cd21d3d9ba6878b 580550 samtools_0.1.13-1_amd64.deb
d990aca5b5f63a23cf7720f2b977849b4cde3856 161408 libbam-dev_0.1.13-1_amd64.deb
Checksums-Sha256:
352ef2f864b9e4995b8e2ecce7db9e10f5997f1de441169cc3ae2af8509970f8 1939
samtools_0.1.13-1.dsc
e0d182c31abb4f784c2abc1ad6dce19c7e4adfab7afa968c63b05d964104d69f 365042
samtools_0.1.13.orig.tar.bz2
b3a6f67b01700754f1bcc0fa83d25521416ef5504d0b5edf93da1db8642ea85a 6523
samtools_0.1.13-1.debian.tar.gz
061ca89ee9ad31ad5bdf3d203aa7f449322f6dd32c81c9a8ed91d637d97efa74 580550
samtools_0.1.13-1_amd64.deb
229e885b66be5bc3fa85f5d55688da08fca77915cceea18034786bbb50fb643e 161408
libbam-dev_0.1.13-1_amd64.deb
Files:
15ab3b741fea8cb262d687a252e84c3c 1939 science optional samtools_0.1.13-1.dsc
2e66b94639f90d10cc935bb145ef71f3 365042 science optional
samtools_0.1.13.orig.tar.bz2
e5f9a79e9b675ab785f139f25b2a289e 6523 science optional
samtools_0.1.13-1.debian.tar.gz
08d99759c6f9ee85bc8122ef80a262d0 580550 science optional
samtools_0.1.13-1_amd64.deb
438b272f8b7aa775457a619359aa4027 161408 libdevel optional
libbam-dev_0.1.13-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)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=AL4b
-----END PGP SIGNATURE-----
--- End Message ---
