Your message dated Fri, 08 Jul 2011 05:02:09 +0000
with message-id <[email protected]>
and subject line Bug#626761: fixed in fastx-toolkit 0.0.13.1-1
has caused the Debian Bug report #626761,
regarding fastx-toolkit: fgets called with bigger size than length of
destination buffer
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
626761: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=626761
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: fastx-toolkit
Version: 0.0.13-1
Severity: normal
(Report recorded on the Debian bug tracking system).
Dear Gordon,
while trying to build fastx-toolkit on Ubuntu, I encountered the following
warning, treated as error:
Making all in libfastx
make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13/src/libfastx'
gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wextra
-Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum
-Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wextra
-Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum
-Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
cc1: warnings being treated as errors
In file included from /usr/include/stdio.h:930:0,
from fastx.c:18:
In function 'fgets',
inlined from 'fastx_read_next_record' at fastx.c:323:11:
/usr/include/bits/stdio2.h:253:2: error: call to '__fgets_chk_warn' declared
with attribute warning: fgets called with bigger size than length of
destination buffer
In function 'fgets',
inlined from 'fastx_read_next_record' at fastx.c:365:12:
/usr/include/bits/stdio2.h:253:2: error: call to '__fgets_chk_warn' declared
with attribute warning: fgets called with bigger size than length of
destination buffer
make[4]: *** [fastx.o] Error 1
The full log is available here:
https://launchpadlibrarian.net/71709349/buildlog_ubuntu-natty-amd64.fastx-toolkit_0.0.13-1~natty1_FAILEDTOBUILD.txt.gz
I am not sure I understand, but it seems related to “hardening” and the
prevention of buffer overflows. I looked at the two following URLs,
but did not find more information.
https://wiki.ubuntu.com/Security/Features
http://wiki.debian.org/Hardening
Cheers,
--
Charles
--- End Message ---
--- Begin Message ---
Source: fastx-toolkit
Source-Version: 0.0.13.1-1
We believe that the bug you reported is fixed in the latest version of
fastx-toolkit, which is due to be installed in the Debian FTP archive:
fastx-toolkit_0.0.13.1-1.debian.tar.gz
to main/f/fastx-toolkit/fastx-toolkit_0.0.13.1-1.debian.tar.gz
fastx-toolkit_0.0.13.1-1.dsc
to main/f/fastx-toolkit/fastx-toolkit_0.0.13.1-1.dsc
fastx-toolkit_0.0.13.1-1_amd64.deb
to main/f/fastx-toolkit/fastx-toolkit_0.0.13.1-1_amd64.deb
fastx-toolkit_0.0.13.1.orig.tar.bz2
to main/f/fastx-toolkit/fastx-toolkit_0.0.13.1.orig.tar.bz2
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated fastx-toolkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 08 Jul 2011 13:11:37 +0900
Source: fastx-toolkit
Binary: fastx-toolkit
Architecture: source amd64
Version: 0.0.13.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Charles Plessy <[email protected]>
Description:
fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
Closes: 626761
Changes:
fastx-toolkit (0.0.13.1-1) unstable; urgency=low
.
* New upstream release (Closes: #626761).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Corrected Vcs-Git URL (debian/control).
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