Your message dated Fri, 02 Sep 2011 13:54:18 +0200 with message-id <[email protected]> and subject line Re: [Debian-med-packaging] Bug#640097: autodocktools 1.5.6~rc1+cvs.201 on sid throw some warning on console during start has caused the Debian Bug report #640097, regarding autodocktools 1.5.6~rc1+cvs.201 on sid throw some warning on console during start to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 640097: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=640097 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: autodocktools Version: 1.5.6~rc1+cvs.20110617-1 Severity: normal Dear Maintainer, I´ve tried successfull to start autodocktools(version see summary) from console, but htere are some warnings during startup(I am on a virtual machine with no 3D abilities->run stable than): autodocktools Run ADT from /usr/lib/python2.6/dist-packages/AutoDockTools OpenGL Warning: Failed to connect to host. Make sure 3D acceleration is enabled for this VM. Enable VBO: False Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/Pmv/VisionInterface/PmvNodes.py", line 505 warnings.warn("could not find MSMS library") UserWarning: could not find MSMS library >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/AutoDockTools/autoanalyzeCommands.py", line 75 import types, Tkinter, commands, os, copy, glob, popen2, time DeprecationWarning: The popen2 module is deprecated. Use the subprocess module. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/NetworkEditor/datatypes.py", line 838 warnings.warn(msg) UserWarning: base datatype Molecule not found in types table >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/NetworkEditor/datatypes.py", line 838 warnings.warn(msg) UserWarning: base datatype TreeNodeSet not found in types table >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/NetworkEditor/datatypes.py", line 838 warnings.warn(msg) UserWarning: base datatype MoleculeSet not found in types table >>> May be helpfull to improve package. -- System Information: Debian Release: wheezy/sid APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'proposed-updates'), (500, 'unstable'), (500, 'testing'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.0.0-1-amd64 (SMP w/2 CPU cores) Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages autodocktools depends on: ii mgltools-molkit 1.5.6~rc1+cvs.20110617-1 ii mgltools-pmv 1.5.6~rc1+cvs.20110617-2 ii mgltools-support 1.5.6~rc1+cvs.20110617-1 ii mgltools-viewerframework 1.5.6~rc1+cvs.20110617-2 ii mgltools-volume 1.5.6~rc1+cvs.20110617-1 ii python 2.6.7-3 ii python-imaging-tk 1.1.7-4 ii python2.6 2.6.7-4 ii python2.7 2.7.2-5 Versions of packages autodocktools recommends: ii mgltools-pyautodock 1.5.6~rc1+cvs.20110617-1 ii mgltools-utpackages 1.5.6~rc1+cvs.20110617-1 Versions of packages autodocktools suggests: ii autodock 4.2.3-1 ii autodock-vina 1.1.2-1 ii ballview 1.4.0-4+b1 -- no debconf information
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--- Begin Message ---Hello, On 09/02/2011 12:55 PM, melchiaros wrote: > ... > Warning (from warnings module): > File "/usr/lib/python2.6/dist-packages/Pmv/VisionInterface/PmvNodes.py", > line > 505 > warnings.warn("could not find MSMS library") > UserWarning: could not find MSMS library that is fine. You do not get some non-redistributable non-free parts. > Warning (from warnings module): > File > "/usr/lib/python2.6/dist-packages/AutoDockTools/autoanalyzeCommands.py", > line 75 > import types, Tkinter, commands, os, copy, glob, popen2, time > DeprecationWarning: The popen2 module is deprecated. Use the subprocess > module. this is also "good enough". > Warning (from warnings module): > File "/usr/lib/python2.6/dist-packages/NetworkEditor/datatypes.py", line 838 > warnings.warn(msg) > UserWarning: base datatype Molecule not found in types table > Warning (from warnings module): > File "/usr/lib/python2.6/dist-packages/NetworkEditor/datatypes.py", line 838 > warnings.warn(msg) > UserWarning: base datatype TreeNodeSet not found in types table > Warning (from warnings module): > File "/usr/lib/python2.6/dist-packages/NetworkEditor/datatypes.py", line 838 > warnings.warn(msg) > UserWarning: base datatype MoleculeSet not found in types table > > May be helpfull to improve package. Have many thanks, but from my side this is fine unless the system is functional. Steffen
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