Your message dated Fri, 27 Apr 2012 22:02:57 +0000
with message-id <[email protected]>
and subject line Bug#667271: fixed in maqview 0.2.5-2
has caused the Debian Bug report #667271,
regarding maqview: ftbfs with GCC-4.7
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
667271: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=667271
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: maqview
Version: 0.2.5-1
Severity: important
Tags: sid wheezy
User: [email protected]
Usertags: ftbfs-gcc-4.7
The package fails to build in a test rebuild on at least amd64 with
gcc-4.7/g++-4.7, but succeeds to build with gcc-4.6/g++-4.6. The
severity of this report may be raised before the wheezy release.
stdhash.hh:496:81: error: 'direct_insert_aux' was not declared in this scope,
and no declarations were found by argument-dependent lookup at the point of
instantiation [-fpermissive]
The full build log can be found at:
http://people.debian.org/~lucas/logs/2012/03/29-clang-gcc47/unstable-gcc47/maqview_0.2.5-1_unstable-gcc47.log
The last lines of the build log are at the end of this report.
Some hints on fixing these issues can be found at
http://gcc.gnu.org/gcc-4.7/porting_to.html
To build with GCC 4.7, either set CC=gcc-4.7 CXX=g++-4.7 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
[...]
gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -g -O2 -Wall -W -DMAQ_LONGREADS -MT
btree.o -MD -MP -MF .deps/btree.Tpo -c -o btree.o btree.c
mv -f .deps/btree.Tpo .deps/btree.Po
gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -g -O2 -Wall -W -DMAQ_LONGREADS -MT
maqmap_index.o -MD -MP -MF .deps/maqmap_index.Tpo -c -o maqmap_index.o
maqmap_index.c
maqmap_index.c: In function 'notify':
maqmap_index.c:43:69: warning: unused parameter 'pos' [-Wunused-parameter]
maqmap_index.c: In function 'read_map_index':
maqmap_index.c:387:12: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
maqmap_index.c: In function 'read_map_next_to':
maqmap_index.c:403:22: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
mv -f .deps/maqmap_index.Tpo .deps/maqmap_index.Po
gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -g -O2 -Wall -W -DMAQ_LONGREADS -MT
zrio.o -MD -MP -MF .deps/zrio.Tpo -c -o zrio.o zrio.c
zrio.c: In function 'get_max_dist':
zrio.c:437:33: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
zrio.c: In function 'build_index':
zrio.c:466:24: warning: variable 'state' set but not used
[-Wunused-but-set-variable]
mv -f .deps/zrio.Tpo .deps/zrio.Po
g++ -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -g -O2 -MT stdhashc.o -MD -MP -MF
.deps/stdhashc.Tpo -c -o stdhashc.o stdhashc.cc
In file included from stdhashc.cc:2:0:
stdhash.hh: In instantiation of 'bool hash_map_misc<keytype_t,
valtype_t>::insert(const keytype_t&, const valtype_t&) [with keytype_t =
unsigned int; valtype_t = int]':
stdhashc.cc:72:51: required from here
stdhash.hh:496:81: error: 'direct_insert_aux' was not declared in this scope,
and no declarations were found by argument-dependent lookup at the point of
instantiation [-fpermissive]
stdhash.hh:496:81: note: declarations in dependent base
'__lh3_hash_base_class<unsigned int>' are not found by unqualified lookup
stdhash.hh:496:81: note: use 'this->direct_insert_aux' instead
make[2]: *** [stdhashc.o] Error 1
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: *** [all] Error 2
dh_auto_build: make -j1 returned exit code 2
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--- End Message ---
--- Begin Message ---
Source: maqview
Source-Version: 0.2.5-2
We believe that the bug you reported is fixed in the latest version of
maqview, which is due to be installed in the Debian FTP archive:
maqview_0.2.5-2.debian.tar.gz
to main/m/maqview/maqview_0.2.5-2.debian.tar.gz
maqview_0.2.5-2.dsc
to main/m/maqview/maqview_0.2.5-2.dsc
maqview_0.2.5-2_amd64.deb
to main/m/maqview/maqview_0.2.5-2_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated maqview package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 27 Apr 2012 14:44:13 +0200
Source: maqview
Binary: maqview
Architecture: source amd64
Version: 0.2.5-2
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
maqview - graphical read alignment viewer for short gene sequences
Closes: 667271
Changes:
maqview (0.2.5-2) unstable; urgency=low
.
* debian/patches/gcc-4.7.patch: Enable building with g++-4.7
Closes: #667271
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- Removed quilt from Build-Depends because it is not needed
* debian/rules: Use autoreconf which is more simple and transparent
than the manual way to build twice in a row
* debian/copyright: DEP5 (verified using `cme fix dpkg-copyright`)
* debian/upstream: Reference
* debhelper 9 (control+compat) - however hardening flags do not
seem to propagate
* debian/maqview.lintian-overrides: Different output format
from lintian
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bc70484a9a2a8ccf7bc1b1e9b16d98a44446d4cb 7342 maqview_0.2.5-2.debian.tar.gz
8a47e66a4a28cafc769996e8a7d67dcf9b6e9fe5 362422 maqview_0.2.5-2_amd64.deb
Checksums-Sha256:
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maqview_0.2.5-2.dsc
cc4e7a43398f27ee1f9c16f9d1a0c96c503111a85f782c5ccf64ca022a823c91 7342
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maqview_0.2.5-2_amd64.deb
Files:
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7c35ef242411dc68698a4da1225cf6c5 7342 science optional
maqview_0.2.5-2.debian.tar.gz
812d106ea5a3cfa503f5dea3cc0e9573 362422 science optional
maqview_0.2.5-2_amd64.deb
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--- End Message ---
