Your message dated Tue, 15 May 2012 10:51:12 +0000
with message-id <[email protected]>
and subject line Bug#666732: fixed in mrtrix 0.2.10-2
has caused the Debian Bug report #666732,
regarding mrtrix: Adjust for the new octave package version 3.6.1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
666732: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=666732
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: mrtrix
Version: 0.2.10-1
Severity: important
Tags: patch
The current version of mrtrix in sid build-depends on octave3.2-headers.
This later package will be removed from unstable once the transition to
the new version of octave (currently 3.6.1) will be completed (see the
wiki page of the DOG [1]).
The mtrtix package needs octave3.2-headers only for including the
makefile fragment defs.make. This file has been dropped in the
Debian packaging of Octave 3.6.1. Just using the octave-config script
is the recommended way of going now. For that it is necessary to
build-depend on liboctave-dev.
I am attaching below a patch for fixing the issue in this bug report. The
patch was obtained through debdiff. I added the corresponding entries to
debian/changelog. Note also that I added "Suggests: octave" to the
binary mrtrix package, a change that you may reconsider.
Rafael
[1] http://wiki.debian.org/Teams/DebianOctaveGroup
-- System Information:
Debian Release: wheezy/sid
APT prefers testing
APT policy: (700, 'testing'), (650, 'unstable')
Architecture: i386 (i686)
Kernel: Linux 3.2.0-2-686-pae (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Rafael
diff -Nru mrtrix-0.2.10/debian/changelog mrtrix-0.2.10/debian/changelog
--- mrtrix-0.2.10/debian/changelog 2012-02-10 07:44:20.000000000 +0000
+++ mrtrix-0.2.10/debian/changelog 2012-04-01 11:35:02.000000000 +0000
@@ -1,3 +1,12 @@
+mrtrix (0.2.10-2) UNRELEASED; urgency=low
+
+ * debian/control:
+ + Build-depend on liboctave-dev
+ + Package mrtrix now suggests octave
+ * debian/rules: Use octave-config directly for obtaining Octave path
+
+ -- Rafael Laboissiere <[email protected]> Sun, 01 Apr 2012 13:12:39
+0200
+
mrtrix (0.2.10-1) unstable; urgency=low
* New upstream release.
diff -Nru mrtrix-0.2.10/debian/control mrtrix-0.2.10/debian/control
--- mrtrix-0.2.10/debian/control 2012-02-10 07:43:58.000000000 +0000
+++ mrtrix-0.2.10/debian/control 2012-04-01 11:11:56.000000000 +0000
@@ -4,7 +4,7 @@
Uploaders: Michael Hanke <[email protected]>, Yaroslav Halchenko
<[email protected]>
Build-Depends: debhelper (>= 7.0.50~), libgsl0-dev, python, pkg-config,
libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev,
- octave3.2-headers | octave-headers
+ liboctave-dev
Standards-Version: 3.9.2
Section: science
Homepage: http://www.brain.org.au/software/mrtrix
@@ -16,7 +16,7 @@
Section: science
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: mrtrix-doc
+Suggests: mrtrix-doc, octave
Description: diffusion-weighted MRI white matter tractography
Set of tools to perform diffusion-weighted MRI white matter tractography of
the
brain in the presence of crossing fibres, using Constrained Spherical
diff -Nru mrtrix-0.2.10/debian/rules mrtrix-0.2.10/debian/rules
--- mrtrix-0.2.10/debian/rules 2012-02-10 07:42:29.000000000 +0000
+++ mrtrix-0.2.10/debian/rules 2012-04-01 11:27:52.000000000 +0000
@@ -1,8 +1,8 @@
#!/usr/bin/make -f
# -*- makefile -*-
-# get octave paths (have to build-depend on octave-headers)
-include /usr/share/octave/debian/defs.make
+# get Octave path for *.m files
+MDIR = $(shell octave-config --print LOCALFCNFILEDIR)
# same for Matlab
include /usr/share/matlab/debian/defs.make
--- End Message ---
--- Begin Message ---
Source: mrtrix
Source-Version: 0.2.10-2
We believe that the bug you reported is fixed in the latest version of
mrtrix, which is due to be installed in the Debian FTP archive:
mrtrix-doc_0.2.10-2_all.deb
to main/m/mrtrix/mrtrix-doc_0.2.10-2_all.deb
mrtrix_0.2.10-2.debian.tar.gz
to main/m/mrtrix/mrtrix_0.2.10-2.debian.tar.gz
mrtrix_0.2.10-2.dsc
to main/m/mrtrix/mrtrix_0.2.10-2.dsc
mrtrix_0.2.10-2_amd64.deb
to main/m/mrtrix/mrtrix_0.2.10-2_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Hanke <[email protected]> (supplier of updated mrtrix package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 15 May 2012 11:39:26 +0200
Source: mrtrix
Binary: mrtrix mrtrix-doc
Architecture: source amd64 all
Version: 0.2.10-2
Distribution: unstable
Urgency: low
Maintainer: NeuroDebian Team <[email protected]>
Changed-By: Michael Hanke <[email protected]>
Description:
mrtrix - diffusion-weighted MRI white matter tractography
mrtrix-doc - documentation for mrtrix
Closes: 665582 666732
Changes:
mrtrix (0.2.10-2) unstable; urgency=low
.
[ Rafael Laboissiere ]
* debian/control:
+ Build-depend on liboctave-dev (Closes: #666732).
.
[ Michael Hanke ]
* Bumped Standards-version to 3.9.3 -- no changes necessary.
* Add patch for glib 2.32 transition (Closes: #665582)
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Files:
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