Your message dated Fri, 08 Mar 2013 09:48:31 +0000 with message-id <[email protected]> and subject line Bug#702512: fixed in openms 1.9.0-3 has caused the Debian Bug report #702512, regarding openms: FTBFS when DEB_HOST_MULTIARCH != DEB_BUILD_GNU_TYPE (e.g., on i386) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 702512: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=702512 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: openms Version: 1.9.0-2 Severity: serious Justification: fails to build from source Builds of openms on certain architectures (i386 and kfreebsd-i386 so far) have been failing because they base expected multiarch paths on DEB_BUILD_GNU_TYPE rather than DEB_HOST_MULTIARCH, which may differ. (For instance, on i386, DEB_BUILD_GNU_TYPE is i486-linux-gnu, whereas DEB_HOST_MULTIARCH is i386-linux-gnu.) cd /build/buildd-openms_1.9.0-2-i386-iJCLgn/openms-1.9.0/debian/build && \ /usr/bin/cmake -DCMAKE_FIND_LIBRARY_SUFFIXES=".so" \ -DCONTRIB_LIB_DIR="/usr/lib;/usr/lib/i486-linux-gnu;/lib/i486-linux-gnu" \ -DCF_OPENMS_DATA_PATH=/usr/share/openms-common/OpenMS/ \ -DCF_OPENMS_DOC_PATH=/usr/share/doc/openms-doc/ \ -DCMAKE_BUILD_TYPE=release ../.. -- The C compiler identification is GNU 4.7.2 -- The CXX compiler identification is GNU 4.7.2 [...] CMake Error at cmake/OpenMSBuildSystem_macros.cmake:11 (MESSAGE): Unable to find xerces_c library! Searched names are: [xerces-c_3;xerces-c_static_3;libxerces-c;xerces-c] Please make sure it is part of the contrib (which we assume to be in either of these directories: /usr/lib;/usr/lib/i486-linux-gnu;/lib/i486-linux-gnu;/build/buildd-openms_1.9.0-2-i386-iJCLgn/openms-1.9.0/contrib/lib/;/opt/local/lib/;/usr/local/lib/) According to cmake's changelog, find_library has supported multiarch paths since 2.8.4+dfsg.1-3 from 2011, so you shouldn't necessarily need to override its search path at all; however, if you do, please do so on the basis of the correct variable. Thanks! -- System Information: Debian Release: 7.0 APT prefers testing APT policy: (500, 'testing'), (500, 'stable'), (300, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 3.2.0-4-amd64 (SMP w/4 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash
--- End Message ---
--- Begin Message ---Source: openms Source-Version: 1.9.0-3 We believe that the bug you reported is fixed in the latest version of openms, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Filippo Rusconi <[email protected]> (supplier of updated openms package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Thu, 07 Mar 2013 18:38:56 +0100 Source: openms Binary: libopenms1 libopenms-dev topp openms-common openms-doc openms Architecture: source amd64 all Version: 1.9.0-3 Distribution: unstable Urgency: low Maintainer: The Debichem Group <[email protected]> Changed-By: Filippo Rusconi <[email protected]> Description: libopenms-dev - library for LC/MS data management and analysis - dev files libopenms1 - library for LC/MS data management and analysis - runtime openms - package for LC/MS data management and analysis openms-common - package for LC/MS data management and analysis - shared data openms-doc - package for LC/MS data management and analysis - documentation topp - set of programs implementing The OpenMS Proteomic Pipeline Closes: 702512 702518 Changes: openms (1.9.0-3) unstable; urgency=low . * debian/rules: fix problem with DEB_BUILD_GNU_TYPE not holding proper values on some platforms, like i386, by adding DEB_HOST_MULTIARCH. Thanks to "Aaron M. Ucko" <[email protected]> (Closes: #702512); * Fix the watch file, thanks to Nick Black <[email protected]> (Closes: #702518); . * New code in patch ensures that there is no creation of symlinks by CMake after building of the libraries, since the symlinks are created anyways in debian/. Checksums-Sha1: 9f92c83b916e86764f4be2e1267bc563af4b54f4 2086 openms_1.9.0-3.dsc b37274dcf688edebbaf4eb2e7370840c779e529c 15031 openms_1.9.0-3.debian.tar.gz 75eea061107c4aa4d4ae3d69597e066712ce8a3f 5728734 libopenms1_1.9.0-3_amd64.deb ba3492e6073fe67133dd421d6acf1b73d9d22397 844198 libopenms-dev_1.9.0-3_amd64.deb 6400b236ba116978a26fc8fc7d1fa548d172fd48 15471588 topp_1.9.0-3_amd64.deb 9825c73421704b0f6bbb640976f3be928a66171f 32938506 openms-common_1.9.0-3_all.deb 506c32aea4967339e46d7c0698d73dadbe0e918a 16907662 openms-doc_1.9.0-3_all.deb 61be2fd03e0d883e57dfba15f1527f960bece6b7 23914 openms_1.9.0-3_all.deb Checksums-Sha256: 68f16875a21237634de6af39744ad69955d1a82ad38314ca053ed8288427a045 2086 openms_1.9.0-3.dsc f16fcd5ca04784c905de6b3c6db0609b3d82485c4c5eb3113bed5292510b7efa 15031 openms_1.9.0-3.debian.tar.gz 5a6d203b0b2fa931932c81e73eb10e2bacf66ab2b7e66a9aa3e047a1a46bc14a 5728734 libopenms1_1.9.0-3_amd64.deb ec291bd16f063bbcf9b102e8bf6f29954830394a8d606d5456e46fd46f30cb95 844198 libopenms-dev_1.9.0-3_amd64.deb 81e8c69fe5b60a5c1453fd17642a17c2ed5503910e42dfb24224d207c0b3803b 15471588 topp_1.9.0-3_amd64.deb 563adc3edf81b9de644510d67cf0fdf9121b2a4682719a73ab08a3fce4ef8662 32938506 openms-common_1.9.0-3_all.deb 942b46da5536fdd32d999be7b1777f3bba9ab508159c052388282ea2cd3a0f1f 16907662 openms-doc_1.9.0-3_all.deb fde74e6635ad4c69e2075a10e6f9e48456b0e3d5925330ba09323c983cab5851 23914 openms_1.9.0-3_all.deb Files: 8a9ce2a702f033b1fa44e7c2ccd417e9 2086 science optional openms_1.9.0-3.dsc 68704c6bfab1d0120c0c9c9177643f13 15031 science optional openms_1.9.0-3.debian.tar.gz 6bc960f510b84a9a7d86b4f41a3dd9a5 5728734 libs optional libopenms1_1.9.0-3_amd64.deb c6af582fd383b6afd7707e488602a420 844198 libdevel optional libopenms-dev_1.9.0-3_amd64.deb 7bea648afa65613eca3f118af157fa31 15471588 science optional topp_1.9.0-3_amd64.deb 13ce65a80556acc9cb61725bcedb99d9 32938506 science optional openms-common_1.9.0-3_all.deb 9ead813f9ffefae7ffa3668c31b8aef2 16907662 doc optional openms-doc_1.9.0-3_all.deb b9b811335bd5da0362256eb9fdb43a3b 23914 science optional openms_1.9.0-3_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iEYEARECAAYFAlE5kB0ACgkQTTOs5MePaHyT8wCZAdodzS0+rODBDpleIdBFhX+3 raMAoJ0wijewtV7ULfCKuLIm17H8d2+C =vcJ/ -----END PGP SIGNATURE-----
--- End Message ---
