Your message dated Sat, 16 Mar 2013 14:52:11 +0900
with message-id <[email protected]>
and subject line Re: [Debian-med-packaging] Bug#703089: arb_edit4 broken in
BioLinux (Ubuntu12.04)
has caused the Debian Bug report #703089,
regarding arb_edit4 broken in BioLinux (Ubuntu12.04)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
703089: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=703089
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: arb
Version: 5.3-private-8210
Nothing happens when trying to open the ARB_EDIT4 sequence editor, but a file
not found error in the terminal:
sh: 1: arb_edit4: not found
The file is indeed not found under /usr/local/bin, /usr/lib/arb,
/usr/lib/arb/bin or anywhere else in the system. A similar file is found under
"/usr/lib/arb/bin/arb_edit". Softlinking this file to "arb_edit4" has still no
effect but a message referring to the opening of the old ARB editor.
Already checked the correct paths in the environmental variables, and
softlinked the libmotif libraries from 3 to 4.
This error is not reproduced when installing the latest arb version
5.5-org-9167 from source, but this is not available through the repositories
and version 5.3 is still the one being shipped with BioLinux. And I don't
really know what went wrong.
I'm using the preinstalled arb in Biolinux (Ubuntu 12.04 precise), kernel
3.2.0-38-generic #61-Ubuntu SMP , libc6 2.15-0ubuntu10.3.
This error is replicated in another BioLinux7 installation on an i7x4 laptop.
cheers.
Germän Bonilla-Rosso
-------------------------------
Inst för mikrobiologi
Box 7025
BioCentrum
750 07 UPPSALA
(+46) 018-673204
--- End Message ---
--- Begin Message ---
Le Fri, Mar 15, 2013 at 03:28:41PM +0000, German Bonilla Rosso a écrit :
> Package: arb Version: 5.3-private-8210
>
> Nothing happens when trying to open the ARB_EDIT4 sequence editor, but a file
> not found error in the terminal:
>
> sh: 1: arb_edit4: not found
Hi German
indeed, /usr/lib/arb/bin/arb_edit4 is not present in arb 5.3 in bio-linux's
PPA, (but /usr/lib/arb/bin/arb_edit is). However, this is not something that
Debian can do about as we are currently still distributing version 5.5-1.
I am therefore closing this bug, but you are free to keep the discussion here
if you have answers from developers more familiar with Bio-Linux. Otherwise,
I suggest you to contact Bio-Linux directly.
http://nebc.nerc.ac.uk/tools/bio-linux/bio-linux-feedback
Have a nice week-end,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--- End Message ---
