Your message dated Mon, 08 Apr 2013 08:48:19 +0000
with message-id <[email protected]>
and subject line Bug#683538: fixed in igv 2.2.7+dfsg-1
has caused the Debian Bug report #683538,
regarding igv: Transition package to use default java implementation
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
683538: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=683538
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: igv
Version: 2.0.30-1
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu quantal ubuntu-patch openjdk-7-transition
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Dear Maintainer,
In Ubuntu, the attached patch was applied to achieve the following:
* Transition package to default java implementation:
- d/control: Switch openjdk-6-{jdk|jre} dependencies to default-{jdk|jre}.
This ensures that the package will use th default java implementation provided
by the distribution - this has change in Ubuntu quantal to openjdk-7.
Thanks for considering the patch.
- -- System Information:
Debian Release: wheezy/sid
APT prefers quantal-updates
APT policy: (500, 'quantal-updates'), (500, 'quantal-security'), (500,
'quantal')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.5.0-7-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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diff -Nru igv-2.0.30/debian/changelog igv-2.0.30/debian/changelog
diff -Nru igv-2.0.30/debian/control igv-2.0.30/debian/control
--- igv-2.0.30/debian/control 2011-07-26 18:30:25.000000000 +0100
+++ igv-2.0.30/debian/control 2012-08-01 15:51:47.000000000 +0100
@@ -4,7 +4,7 @@
Maintainer: Debian Med Packaging Team <[email protected]>
DM-Upload-Allowed: yes
Uploaders: Shaun Jackman <[email protected]>
-Build-Depends: ant, junit4, openjdk-6-jdk|java-compiler, debhelper (>= 7.0.50~),
+Build-Depends: ant, junit4, default-jdk|java-compiler, debhelper (>= 7.0.50~),
libbatik-java (>>1.7),
libcommons-logging-java, libcommons-math-java, libcommons-net-java,
libconcurrent-java,
@@ -19,7 +19,7 @@
Package: igv
Architecture: all
-Depends: openjdk-6-jre|java-runtime, ${shlibs:Depends}, ${misc:Depends},
+Depends: default-jre|java-runtime, ${shlibs:Depends}, ${misc:Depends},
libbatik-java (>>1.7),
libcommons-logging-java, libcommons-math-java, libcommons-net-java,
libconcurrent-java,
--- End Message ---
--- Begin Message ---
Source: igv
Source-Version: 2.2.7+dfsg-1
We believe that the bug you reported is fixed in the latest version of
igv, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <[email protected]> (supplier of updated igv package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 23 Feb 2013 22:24:32 +0100
Source: igv
Binary: igv
Architecture: source all
Version: 2.2.7+dfsg-1
Distribution: experimental
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Olivier Sallou <[email protected]>
Description:
igv - Integrative Genomics Viewer
Closes: 683538
Changes:
igv (2.2.7+dfsg-1) experimental; urgency=low
.
[ Andreas Tille ]
* New upstream version
* debian/upstream: Add citation information
* debian/control:
- Enhanced long description
- Standards-Version: 3.9.3 (no changes needed)
- Enable JDK transition (thanks to James Page <[email protected]>
for the patch)
Closes: #683538
* debian/copyright:
- Proper DEP5 Format field
- Fixed Source field
- Added Files-Excluded to document what files were excluded from upstream
* debian/rules: get-orig-source using uscan from Git to exclude
Files-excluded automatically
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igv_2.2.7+dfsg-1_all.deb
Files:
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igv_2.2.7+dfsg-1.dsc
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igv_2.2.7+dfsg.orig.tar.xz
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igv_2.2.7+dfsg-1.debian.tar.gz
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