Your message dated Tue, 20 Aug 2013 15:03:44 +0000
with message-id <[email protected]>
and subject line Bug#714368: fixed in cvxopt 1.1.4-1.1
has caused the Debian Bug report #714368,
regarding src:cvxopt: FTBFS against glpk 4.51-1
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
714368: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=714368
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:cvxopt
Version: 1.1.4-1
Severity: important
Tags: jessie sid
Usertags: glpk

Dear Maintainer,

cvxopt fails to build from source against glpk 4.51-1, which is currently
available in experimental. A build log is attached to this report.

The new version of glpk introduces several API changes, most of which are
described in the NEWS file coming with the package.

Note that the severity of the present bug report will be raised once the new
version of glpk is uploaded to sid.

Cheers,

-- 
 .''`.    Sébastien Villemot
: :' :    Debian Developer
`. `'     http://www.dynare.org/sebastien
  `-      GPG Key: 4096R/381A7594
 dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: paquet source cvxopt
dpkg-buildpackage: version source 1.1.4-1
dpkg-buildpackage: source changé par Soeren Sonnenburg <[email protected]>
 dpkg-source --before-build cvxopt-1.1.4
dpkg-buildpackage: architecture hôte amd64
 fakeroot debian/rules clean
test -x debian/rules
dh_testroot
dh_clean 
for buildver in 2.7; do \
                cd /home/sebastien/debian/transitions/glpk/cvxopt-1.1.4 && cd 
src && \
                        python$buildver setup.py clean \
                        -a; \
        done
running clean
'build/lib.linux-x86_64-2.7' does not exist -- can't clean it
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -rf debian/python-module-stampdir
find "/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4" -name '*.py[co]' 
-delete
find "/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4" -name __pycache__ 
-type d -empty -delete
find "/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4" -prune -name 
'*.egg-info' -exec rm -rf '{}' ';'
rm -f debian/stamp-docs 
make -C doc clean
make[1]: entrant dans le répertoire « 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/doc »
rm -rf build/*
make[1]: quittant le répertoire « 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/doc »
rm -f -r src/build
 debian/rules build
test -x debian/rules
mkdir -p "src"
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a 
deprecated variable
mkdir -p debian/python-module-stampdir
set -e; for buildver in 2.7; do \
                cd /home/sebastien/debian/transitions/glpk/cvxopt-1.1.4 && cd 
src && \
                        python$buildver setup.py build \
                        
--build-base="/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build"; \
        done
running build
running build_py
creating /home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build
creating 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7
creating 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/coneprog.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/msk.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/misc.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/info.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/__init__.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/printing.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/solvers.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/modeling.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
copying python/cvxprog.py -> 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt
running build_ext
building 'gsl' extension
creating 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7
creating 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7/C
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 
-Wall -Wstrict-prototypes -fPIC -I/usr/include/gsl -I/usr/include/python2.7 -c 
C/gsl.c -o 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7/C/gsl.o
C/gsl.c: In function ‘initgsl’:
C/gsl.c:197:13: warning: variable ‘m’ set but not used 
[-Wunused-but-set-variable]
   PyObject *m;
             ^
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 
-Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall 
-Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector 
--param=ssp-buffer-size=4 -Wformat -Werror=format-security 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7/C/gsl.o
 -lm -lgsl -lblas -o 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt/gsl.so
building 'fftw' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 
-Wall -Wstrict-prototypes -fPIC -I/usr/include -I/usr/include/python2.7 -c 
C/fftw.c -o 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7/C/fftw.o
C/fftw.c: In function ‘initfftw’:
C/fftw.c:1237:13: warning: variable ‘m’ set but not used 
[-Wunused-but-set-variable]
   PyObject *m;
             ^
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 
-Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall 
-Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector 
--param=ssp-buffer-size=4 -Wformat -Werror=format-security 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7/C/fftw.o
 -L/usr/lib/atlas -lfftw3 -lblas -o 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/lib.linux-x86_64-2.7/cvxopt/fftw.so
building 'glpk' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 
-Wall -Wstrict-prototypes -fPIC -I/usr/include -I/usr/include/python2.7 -c 
C/glpk.c -o 
/home/sebastien/debian/transitions/glpk/cvxopt-1.1.4/src/build/temp.linux-x86_64-2.7/C/glpk.o
C/glpk.c:45:25: error: ‘LPX_K_MSGLEV’ undeclared here (not in a function)
     {"LPX_K_MSGLEV",    LPX_K_MSGLEV,   'i'}, 
                         ^
C/glpk.c:46:25: error: ‘LPX_K_SCALE’ undeclared here (not in a function)
     {"LPX_K_SCALE",     LPX_K_SCALE,    'i'},
                         ^
C/glpk.c:47:25: error: ‘LPX_K_DUAL’ undeclared here (not in a function)
     {"LPX_K_DUAL",      LPX_K_DUAL,     'i'},
                         ^
C/glpk.c:48:25: error: ‘LPX_K_PRICE’ undeclared here (not in a function)
     {"LPX_K_PRICE",     LPX_K_PRICE,    'i'},
                         ^
C/glpk.c:49:25: error: ‘LPX_K_RELAX’ undeclared here (not in a function)
     {"LPX_K_RELAX",     LPX_K_RELAX,    'f'},
                         ^
C/glpk.c:50:25: error: ‘LPX_K_TOLBND’ undeclared here (not in a function)
     {"LPX_K_TOLBND",    LPX_K_TOLBND,   'f'},
                         ^
C/glpk.c:51:25: error: ‘LPX_K_TOLDJ’ undeclared here (not in a function)
     {"LPX_K_TOLDJ",     LPX_K_TOLDJ,    'f'},
                         ^
C/glpk.c:52:25: error: ‘LPX_K_TOLPIV’ undeclared here (not in a function)
     {"LPX_K_TOLPIV",    LPX_K_TOLPIV,   'f'},
                         ^
C/glpk.c:53:25: error: ‘LPX_K_ROUND’ undeclared here (not in a function)
     {"LPX_K_ROUND",     LPX_K_ROUND,    'i'},
                         ^
C/glpk.c:54:25: error: ‘LPX_K_OBJLL’ undeclared here (not in a function)
     {"LPX_K_OBJLL",     LPX_K_OBJLL,    'f'},
                         ^
C/glpk.c:55:25: error: ‘LPX_K_OBJUL’ undeclared here (not in a function)
     {"LPX_K_OBJUL",     LPX_K_OBJUL,    'f'},
                         ^
C/glpk.c:56:25: error: ‘LPX_K_ITLIM’ undeclared here (not in a function)
     {"LPX_K_ITLIM",     LPX_K_ITLIM,    'i'},
                         ^
C/glpk.c:57:25: error: ‘LPX_K_ITCNT’ undeclared here (not in a function)
     {"LPX_K_ITCNT",     LPX_K_ITCNT,    'i'}, 
                         ^
C/glpk.c:58:25: error: ‘LPX_K_TMLIM’ undeclared here (not in a function)
     {"LPX_K_TMLIM",     LPX_K_TMLIM,    'f'},
                         ^
C/glpk.c:59:25: error: ‘LPX_K_OUTFRQ’ undeclared here (not in a function)
     {"LPX_K_OUTFRQ",    LPX_K_OUTFRQ,   'i'},
                         ^
C/glpk.c:60:25: error: ‘LPX_K_OUTDLY’ undeclared here (not in a function)
     {"LPX_K_OUTDLY",    LPX_K_OUTDLY,   'f'},
                         ^
C/glpk.c:61:25: error: ‘LPX_K_BRANCH’ undeclared here (not in a function)
     {"LPX_K_BRANCH",    LPX_K_BRANCH,   'i'},
                         ^
C/glpk.c:62:25: error: ‘LPX_K_BTRACK’ undeclared here (not in a function)
     {"LPX_K_BTRACK",    LPX_K_BTRACK,   'i'},
                         ^
C/glpk.c:63:25: error: ‘LPX_K_TOLINT’ undeclared here (not in a function)
     {"LPX_K_TOLINT",    LPX_K_TOLINT,   'f'},
                         ^
C/glpk.c:64:25: error: ‘LPX_K_TOLOBJ’ undeclared here (not in a function)
     {"LPX_K_TOLOBJ",    LPX_K_TOLOBJ,   'f'},
                         ^
C/glpk.c:65:25: error: ‘LPX_K_MPSINFO’ undeclared here (not in a function)
     {"LPX_K_MPSINFO",   LPX_K_MPSINFO,  'i'},
                         ^
C/glpk.c:66:25: error: ‘LPX_K_MPSOBJ’ undeclared here (not in a function)
     {"LPX_K_MPSOBJ",    LPX_K_MPSOBJ,   'i'},
                         ^
C/glpk.c:67:25: error: ‘LPX_K_MPSORIG’ undeclared here (not in a function)
     {"LPX_K_MPSORIG",   LPX_K_MPSORIG,  'i'},
                         ^
C/glpk.c:68:25: error: ‘LPX_K_MPSWIDE’ undeclared here (not in a function)
     {"LPX_K_MPSWIDE",   LPX_K_MPSWIDE,  'i'},
                         ^
C/glpk.c:69:25: error: ‘LPX_K_MPSFREE’ undeclared here (not in a function)
     {"LPX_K_MPSFREE",   LPX_K_MPSFREE,  'i'},
                         ^
C/glpk.c:70:25: error: ‘LPX_K_MPSSKIP’ undeclared here (not in a function)
     {"LPX_K_MPSSKIP",   LPX_K_MPSSKIP,  'i'},
                         ^
C/glpk.c:71:25: error: ‘LPX_K_LPTORIG’ undeclared here (not in a function)
     {"LPX_K_LPTORIG",   LPX_K_LPTORIG,  'i'},
                         ^
C/glpk.c:72:25: error: ‘LPX_K_PRESOL’ undeclared here (not in a function)
     {"LPX_K_PRESOL",    LPX_K_PRESOL,   'i'},
                         ^
C/glpk.c: In function ‘simplex’:
C/glpk.c:129:5: error: unknown type name ‘LPX’
     LPX *lp;
     ^
C/glpk.c:185:5: warning: implicit declaration of function ‘lpx_create_prob’ 
[-Wimplicit-function-declaration]
     lp = lpx_create_prob();
     ^
C/glpk.c:185:8: warning: assignment makes pointer from integer without a cast 
[enabled by default]
     lp = lpx_create_prob();
        ^
C/glpk.c:186:5: warning: implicit declaration of function ‘lpx_add_rows’ 
[-Wimplicit-function-declaration]
     lpx_add_rows(lp, m+p);
     ^
C/glpk.c:187:5: warning: implicit declaration of function ‘lpx_add_cols’ 
[-Wimplicit-function-declaration]
     lpx_add_cols(lp, n);
     ^
C/glpk.c:190:9: warning: implicit declaration of function ‘lpx_set_obj_coef’ 
[-Wimplicit-function-declaration]
         lpx_set_obj_coef(lp, i+1, MAT_BUFD(c)[i]);
         ^
C/glpk.c:191:9: warning: implicit declaration of function ‘lpx_set_col_bnds’ 
[-Wimplicit-function-declaration]
         lpx_set_col_bnds(lp, i+1, LPX_FR, 0.0, 0.0);
         ^
C/glpk.c:191:35: error: ‘LPX_FR’ undeclared (first use in this function)
         lpx_set_col_bnds(lp, i+1, LPX_FR, 0.0, 0.0);
                                   ^
C/glpk.c:191:35: note: each undeclared identifier is reported only once for 
each function it appears in
C/glpk.c:194:9: warning: implicit declaration of function ‘lpx_set_row_bnds’ 
[-Wimplicit-function-declaration]
         lpx_set_row_bnds(lp, i+1, LPX_UP, 0.0, MAT_BUFD(h)[i]);
         ^
C/glpk.c:194:35: error: ‘LPX_UP’ undeclared (first use in this function)
         lpx_set_row_bnds(lp, i+1, LPX_UP, 0.0, MAT_BUFD(h)[i]);
                                   ^
C/glpk.c:196:37: error: ‘LPX_FX’ undeclared (first use in this function)
         lpx_set_row_bnds(lp, i+m+1, LPX_FX, MAT_BUFD(b)[i],
                                     ^
C/glpk.c:205:9: warning: implicit declaration of function ‘lpx_delete_prob’ 
[-Wimplicit-function-declaration]
         free(a);  free(rn);  free(cn);  lpx_delete_prob(lp);
         ^
C/glpk.c:244:5: warning: implicit declaration of function ‘lpx_load_matrix’ 
[-Wimplicit-function-declaration]
     lpx_load_matrix(lp, nnz, rn, cn, a);
     ^
C/glpk.c:292:17: warning: implicit declaration of function ‘lpx_set_int_parm’ 
[-Wimplicit-function-declaration]
                 else lpx_set_int_parm(lp, param_id,
                 ^
C/glpk.c:312:10: warning: implicit declaration of function ‘lpx_set_real_parm’ 
[-Wimplicit-function-declaration]
          lpx_set_real_parm(lp, param_id,
          ^
C/glpk.c:319:5: warning: implicit declaration of function ‘lpx_simplex’ 
[-Wimplicit-function-declaration]
     switch (lpx_simplex(lp)){
     ^
C/glpk.c:321:14: error: ‘LPX_E_OK’ undeclared (first use in this function)
         case LPX_E_OK:
              ^
C/glpk.c:343:17: warning: implicit declaration of function ‘lpx_get_col_prim’ 
[-Wimplicit-function-declaration]
                 MAT_BUFD(x)[i] = lpx_get_col_prim(lp, i+1);
                 ^
C/glpk.c:347:17: warning: implicit declaration of function ‘lpx_get_row_dual’ 
[-Wimplicit-function-declaration]
                 MAT_BUFD(z)[i] = -lpx_get_row_dual(lp, i+1);
                 ^
C/glpk.c:359:14: error: ‘LPX_E_NOPFS’ undeclared (first use in this function)
         case LPX_E_NOPFS:
              ^
C/glpk.c:369:14: error: ‘LPX_E_NODFS’ undeclared (first use in this function)
         case LPX_E_NODFS:
              ^
C/glpk.c: In function ‘integer’:
C/glpk.c:430:5: error: unknown type name ‘LPX’
     LPX *lp;
     ^
C/glpk.c:492:8: warning: assignment makes pointer from integer without a cast 
[enabled by default]
     lp = lpx_create_prob();
        ^
C/glpk.c:498:35: error: ‘LPX_FR’ undeclared (first use in this function)
         lpx_set_col_bnds(lp, i+1, LPX_FR, 0.0, 0.0);
                                   ^
C/glpk.c:501:35: error: ‘LPX_UP’ undeclared (first use in this function)
         lpx_set_row_bnds(lp, i+1, LPX_UP, 0.0, MAT_BUFD(h)[i]);
                                   ^
C/glpk.c:503:37: error: ‘LPX_FX’ undeclared (first use in this function)
         lpx_set_row_bnds(lp, i+m+1, LPX_FX, MAT_BUFD(b)[i],
                                     ^
C/glpk.c:649:2: warning: passing argument 1 of ‘glp_set_col_kind’ from 
incompatible pointer type [enabled by default]
  glp_set_col_kind(lp, k+1, GLP_IV);
  ^
In file included from C/glpk.c:23:0:
/usr/include/glpk.h:514:6: note: expected ‘struct glp_prob *’ but argument is 
of type ‘int *’
 void glp_set_col_kind(glp_prob *P, int j, int kind);
      ^
C/glpk.c:680:2: warning: passing argument 1 of ‘glp_set_col_kind’ from 
incompatible pointer type [enabled by default]
  glp_set_col_kind(lp, k+1, GLP_BV);
  ^
In file included from C/glpk.c:23:0:
/usr/include/glpk.h:514:6: note: expected ‘struct glp_prob *’ but argument is 
of type ‘int *’
 void glp_set_col_kind(glp_prob *P, int j, int kind);
      ^
C/glpk.c:689:5: warning: implicit declaration of function ‘lpx_intopt’ 
[-Wimplicit-function-declaration]
     switch (lpx_intopt(lp)){
     ^
C/glpk.c:691:14: error: ‘LPX_E_OK’ undeclared (first use in this function)
         case LPX_E_OK:
              ^
C/glpk.c:707:17: warning: implicit declaration of function ‘lpx_mip_col_val’ 
[-Wimplicit-function-declaration]
                 MAT_BUFD(x)[i] = lpx_mip_col_val(lp, i+1);
                 ^
C/glpk.c:713:14: error: ‘LPX_E_FAULT’ undeclared (first use in this function)
         case LPX_E_FAULT:
              ^
C/glpk.c:721:7: error: ‘LPX_E_NOPFS’ undeclared (first use in this function)
  case LPX_E_NOPFS:
       ^
C/glpk.c:729:7: error: ‘LPX_E_NODFS’ undeclared (first use in this function)
  case LPX_E_NODFS:
       ^
C/glpk.c:738:14: error: ‘LPX_E_ITLIM’ undeclared (first use in this function)
         case LPX_E_ITLIM:
              ^
C/glpk.c:747:14: error: ‘LPX_E_TMLIM’ undeclared (first use in this function)
         case LPX_E_TMLIM:
              ^
C/glpk.c:756:7: error: ‘LPX_E_SING’ undeclared (first use in this function)
  case LPX_E_SING:
       ^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
make: *** [debian/python-module-stampdir/python-cvxopt] Erreur 1
dpkg-buildpackage: erreur: debian/rules build a produit une erreur de sortie de 
type 2

Attachment: signature.asc
Description: Digital signature


--- End Message ---
--- Begin Message ---
Source: cvxopt
Source-Version: 1.1.4-1.1

We believe that the bug you reported is fixed in the latest version of
cvxopt, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sébastien Villemot <[email protected]> (supplier of updated cvxopt package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 15 Aug 2013 16:12:35 +0200
Source: cvxopt
Binary: python-cvxopt
Architecture: source amd64
Version: 1.1.4-1.1
Distribution: unstable
Urgency: low
Maintainer: Soeren Sonnenburg <[email protected]>
Changed-By: Sébastien Villemot <[email protected]>
Description: 
 python-cvxopt - Python package for convex optimization
Closes: 714368
Changes: 
 cvxopt (1.1.4-1.1) unstable; urgency=low
 .
   * Non-maintainer upload.
   * glpk-4.49.diff: new patch, fixes FTBFS against recent versions of GLPK
     (Closes: #714368)
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 03fb16132c022b40f8f0f9456fb503184b666139 18530 cvxopt_1.1.4-1.1.debian.tar.gz
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python-cvxopt_1.1.4-1.1_amd64.deb
Checksums-Sha256: 
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Files: 
 649032692dd39de65a9147c3bbce73e0 2132 python optional cvxopt_1.1.4-1.1.dsc
 0693198463b2323318b6634af0591dcf 18530 python optional 
cvxopt_1.1.4-1.1.debian.tar.gz
 e003252b3c1bb1226aae67c2dda9f65d 1304988 python optional 
python-cvxopt_1.1.4-1.1_amd64.deb

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