Your message dated Fri, 09 May 2014 10:03:38 +0000
with message-id <[email protected]>
and subject line Bug#746770: fixed in dialign-t 1.0.2-6
has caused the Debian Bug report #746770,
regarding Conflicting declarations of function simple_aligner
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
746770: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=746770
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: dialign-t
Version: 1.0.2-5
Usertags: goto-cc
During a rebuild of all packages in a clean sid chroot (and cowbuilder+pbuilder)
the build failed with the following error. Please note that we use our research
compiler tool-chain (using tools from the cbmc package), which permits extended
reporting on type inconsistencies at link time.
http://sources.debian.net/src/dialign-t/1.0.2-5/
[...]
gcc -o ./museq \
./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o
./orf.o ./translate.o \
-pipe -Wall -lm -Wl,-z,relro
error: conflicting function declarations "simple_aligner"
old definition in module museq file museq.c line 56
signed int (struct seq_col *, struct diag_col *, struct scr_matrix *, struct
prob_dist *, struct alignment *, signed int)
new definition in module assemble file assemble.c line 398
char (struct seq_col *scol, struct diag_col *dcol, struct scr_matrix *smatrix,
struct prob_dist *pdist, struct alignment *algn, signed int round)
The inconsistent return types will result in wrong interpretation of numeric
values, with possibly even worse results on big-endian systems.
Best,
Michael
pgp3Cx4c8wAI9.pgp
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: dialign-t
Source-Version: 1.0.2-6
We believe that the bug you reported is fixed in the latest version of
dialign-t, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated dialign-t package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 09 May 2014 11:50:13 +0200
Source: dialign-t
Binary: dialign-tx dialign-tx-data
Architecture: source amd64 all
Version: 1.0.2-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
dialign-tx - Segment-based multiple sequence alignment
dialign-tx-data - Segment-based multiple sequence alignment (data files)
Closes: 746770
Changes:
dialign-t (1.0.2-6) unstable; urgency=medium
.
* debian/patches/consistent_declarations.patch: Make sure declarations
of function simple_aligner are consistent
Closes: #746770
Checksums-Sha1:
0c50c59e6f43b27c9d4ae5d80241ecea0cac56e3 2060 dialign-t_1.0.2-6.dsc
ff9dfce078883abfccdc933e8e3b9d717a0861c2 8216 dialign-t_1.0.2-6.debian.tar.xz
0b30e0abd02fa547f360b26d80c594fc4e946662 84446 dialign-tx_1.0.2-6_amd64.deb
8b70346c939aeb951c9b9d8db9ea370d7964499e 877818 dialign-tx-data_1.0.2-6_all.deb
Checksums-Sha256:
7c3def6d4d1dcb69becd83a8e68060f6d7b0f811c220b53a060551136cefe1c1 2060
dialign-t_1.0.2-6.dsc
9bd9c59c4c697921ae63758285e730f04bb36690800e48f27bf8ceec62c34134 8216
dialign-t_1.0.2-6.debian.tar.xz
399c1c321469b7f08ef2a2c96f120405cf2744e39f24714a09d69469b810c15c 84446
dialign-tx_1.0.2-6_amd64.deb
d5dd094994c35228edff1bc63fcef6a2ebde15bb5a4ab00771f0c22b7c0d4eb6 877818
dialign-tx-data_1.0.2-6_all.deb
Files:
2f1e5247206fe248798670e5631186a6 84446 science optional
dialign-tx_1.0.2-6_amd64.deb
369553f12fc8c0734940129bab6e3d81 877818 science optional
dialign-tx-data_1.0.2-6_all.deb
ede02cd0fcf457e126966a6be21fd9d4 2060 science optional dialign-t_1.0.2-6.dsc
f4b858359eaab2594392de880e8737a7 8216 science optional
dialign-t_1.0.2-6.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1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=ynrx
-----END PGP SIGNATURE-----
--- End Message ---
