Your message dated Thu, 10 Jul 2014 10:05:25 +0000
with message-id <[email protected]>
and subject line Bug#752345: fixed in gbrowse 2.54+dfsg-3
has caused the Debian Bug report #752345,
regarding gbrowse: hardcodes /usr/lib/perl5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
752345: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752345
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: gbrowse
Version: 2.54+dfsg-2
Severity: important
User: [email protected]
Usertags: perl-5.20-transition
Starting with version 5.20.0 (currently in experimental), the Debian
perl package is changing the "vendorarch" library paths (currently
/usr/lib/perl5) to include the multiarch triplet and the perl version. See
#748380 for details.
For this to work, packages containing binary perl modules need to migrate
from using the hardcoded /usr/lib/perl5 directory to the value of the
$Config{vendorarch} variable, as defined in the 'Config' module.
This package builds successfully with perl_5.20.0-1 from experimental,
but still installs the Perl files into /usr/lib/perl5 so they won't be
on the Perl search path anymore.
It looks like the package is using the Module::Build based Build.PL build
system, which might be able to do most of the work for you when invoked as
perl Build.PL --installdirs vendor
Please ask on the debian-perl list if you want help with this.
drwxr-xr-x root/root 0 2014-06-17 13:33 ./usr/lib/perl5/
drwxr-xr-x root/root 0 2014-06-17 13:33 ./usr/lib/perl5/auto/
drwxr-xr-x root/root 0 2014-06-17 13:33 ./usr/lib/perl5/auto/Bio/
drwxr-xr-x root/root 0 2014-06-17 13:33
./usr/lib/perl5/auto/Bio/Graphics/
drwxr-xr-x root/root 0 2014-06-17 13:33
./usr/lib/perl5/auto/Bio/Graphics/Browser2/
drwxr-xr-x root/root 0 2014-06-17 13:33
./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/
-rw-r--r-- root/root 10768 2014-06-17 13:33
./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
-rw-r--r-- root/root 0 2014-06-17 13:32
./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
drwxr-xr-x root/root 0 2014-06-17 13:33 ./usr/lib/perl5/Bio/
drwxr-xr-x root/root 0 2014-06-17 13:33 ./usr/lib/perl5/Bio/Graphics/
drwxr-xr-x root/root 0 2014-06-17 13:33
./usr/lib/perl5/Bio/Graphics/Browser2/
-rw-r--r-- root/root 1129 2014-06-17 13:32
./usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
--
Niko Tyni [email protected]
--- End Message ---
--- Begin Message ---
Source: gbrowse
Source-Version: 2.54+dfsg-3
We believe that the bug you reported is fixed in the latest version of
gbrowse, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <[email protected]> (supplier of updated gbrowse package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 30 Jun 2014 23:07:52 +0200
Source: gbrowse
Binary: gbrowse gbrowse-data gbrowse-calign
Architecture: source all amd64
Version: 2.54+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Olivier Sallou <[email protected]>
Description:
gbrowse - GMOD Generic Genome Browser
gbrowse-calign - CAlign helper
gbrowse-data - Sample data to use GBrowse
Closes: 752345
Changes:
gbrowse (2.54+dfsg-3) unstable; urgency=medium
.
[ gregor herrmann ]
* Don't hardcode /usr/lib/perl5 (Closes: #752345).
- debian/rules: use $Config{vendorarch}
- debian/gbrowse-calign.dirs: use $Config{vendorarch} and make executable
- debian/compat: bump to 9
.
[ Charles Plessy ]
* Drop bzip2 compression of the binary packages (xz is now the default).
* Normalised debian/copyright and debian/control with config-model-edit.
* Conforms to Policy version 3.9.5.
.
[ Olivier Sallou ]
* Community upload
* d/patches/source_init_functions: follow Policy 3.9.5
* d/control: add missing build deps
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Files:
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gbrowse-data_2.54+dfsg-3_all.deb
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gbrowse-calign_2.54+dfsg-3_amd64.deb
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gbrowse_2.54+dfsg-3.debian.tar.xz
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