Your message dated Mon, 11 Aug 2014 17:35:55 +0000
with message-id <[email protected]>
and subject line Bug#756690: fixed in petsc 3.4.2.dfsg1-8.1
has caused the Debian Bug report #756690,
regarding petsc: [hdf5 transition] please support hdf5 1.8.13 new packaging
layout
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
756690: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756690
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: petsc
Version: 3.4.2.dfsg1-8
Severity: important
Tags: patch
User: [email protected]
Usertags: HDF5-transition
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Hi,
The hdf5 1.8.13 package in experimental features a new layout for
headers and libraries, so that all the binary packages are now
co-installable.
Please find attached a patch proposal to support both the current
and the new layouts.
Because this bug is in the way of the hdf5 transition I intend to NMU
in a few days. I apologize for the urge, and I hope this approach won't
offend you. Please tell me otherwise.
Kind regards,
_g.
- -- System Information:
Debian Release: jessie/sid
APT prefers testing
APT policy: (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 3.14-1-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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diff -Nru petsc-3.4.2.dfsg1/debian/changelog petsc-3.4.2.dfsg1/debian/changelog
--- petsc-3.4.2.dfsg1/debian/changelog 2014-04-24 19:31:39.000000000 +0200
+++ petsc-3.4.2.dfsg1/debian/changelog 2014-07-26 12:52:19.000000000 +0200
@@ -1,3 +1,10 @@
+petsc (3.4.2.dfsg1-8.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Support hdf5 1.8.13 new packaging layout.
+
+ -- Gilles Filippini <[email protected]> Sat, 26 Jul 2014 12:52:19 +0200
+
petsc (3.4.2.dfsg1-8) unstable; urgency=medium
* Team upload.
diff -Nru petsc-3.4.2.dfsg1/debian/rules petsc-3.4.2.dfsg1/debian/rules
--- petsc-3.4.2.dfsg1/debian/rules 2014-03-04 21:09:33.000000000 +0100
+++ petsc-3.4.2.dfsg1/debian/rules 2014-07-31 15:14:13.000000000 +0200
@@ -41,7 +41,18 @@
# complex) or non-standard distribution (e.g. contrib) is being used.
PETSC_EXT=$(shell chmod +x debian/petsc-ext && debian/petsc-ext $(PETSC_ARCH) $(PETSC_MPI) $(DEBIAN_DIST) && chmod -x debian/petsc-ext)
-PETSC_HDF5_FLAGS=$(shell if [ -e /usr/lib/libhdf5.so ]; then echo "--with-hdf5=1 --with-hdf5-dir=/usr"; fi)
+# Which MPI implementation?
+# set ARCH_DEFAULT_MPI_IMPL
+include /usr/share/mpi-default-dev/debian_defaults
+
+ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)/libhdf5.so),)
+ HDF5_DIR := /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)
+ HDF5_LIB := $(HDF5_DIR)/libhdf5.so
+else
+ HDF5_DIR := /usr
+ HDF5_LIB := $(HDF5_DIR)/lib/$(DEB_HOST_MULTIARCH)/libhdf5.so
+endif
+PETSC_HDF5_FLAGS=$(shell if [ -e $(HDF5_LIB) ]; then echo "--with-hdf5=1 --with-hdf5-dir=$(HDF5_DIR)"; fi)
PETSC_BABEL_FLAGS=$(shell if [ -e /usr/lib/libsidl.so ]; then echo "--with-babel=1 --with-babel-dir=/usr"; fi)
# PETSC_VERSION is used for the package names, library sonames, and
@@ -423,7 +434,7 @@
echo "Unknown MPI implementation, stopping"; \
exit 1; \
fi
- if [ -e /usr/lib/libhdf5.so ]; then \
+ if [ -e $(HDF5_LIB) ]; then \
echo "hdf5-dev=libhdf5-mpi-dev" >> debian/lib$(PETSC_NAME)-dev.substvars; \
else \
echo "hdf5-dev=" >> debian/lib$(PETSC_NAME)-dev.substvars; \
--- End Message ---
--- Begin Message ---
Source: petsc
Source-Version: 3.4.2.dfsg1-8.1
We believe that the bug you reported is fixed in the latest version of
petsc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gilles Filippini <[email protected]> (supplier of updated petsc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 06 Aug 2014 18:00:31 +0200
Source: petsc
Binary: libpetsc3.4.2-dev petsc-dev libpetsc3.4.2 libpetsc3.4.2-dbg
petsc3.4.2-doc
Architecture: source all amd64
Version: 3.4.2.dfsg1-8.1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Gilles Filippini <[email protected]>
Description:
libpetsc3.4.2 - Shared libraries for version 3.4.2 of PETSc
libpetsc3.4.2-dbg - Static debugging libraries for PETSc
libpetsc3.4.2-dev - Static libraries, shared links, header files for PETSc
petsc-dev - Virtual package depending on latest PETSc development package
petsc3.4.2-doc - Documentation and examples for PETSc
Closes: 756690
Changes:
petsc (3.4.2.dfsg1-8.1) unstable; urgency=low
.
* Non-maintainer upload.
* Support hdf5 1.8.13 new packaging layout (closes: #756690).
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