Your message dated Tue, 09 Sep 2014 17:00:07 +0000
with message-id <[email protected]>
and subject line Bug#742579: fixed in hhsuite 2.0.16-2
has caused the Debian Bug report #742579,
regarding hhsuite: FTBFS with libpng 1.6
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
742579: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=742579
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hhsuite
Version: 2.0.16-1
User: [email protected]
Usertags: libpng15-transition
Hi,
libpng maintainers have a plan transition of libpng16[0].
libpng16 is already installed in experimental, and we are re-building
the package depending on libpng16.
As a result, we checked that your package was FTBFS.
Would you check also in your environment?
And if you could confirm problem, could you fix this?
----
In file included from hhalign.C:105:0:
pngwriter.cc: In member function 'void pngwriter::close()':
pngwriter.cc:1001:23: warning: 'const char*
png_convert_to_rfc1123(png_structrp, png_const_timep)' is deprecated
(declared at /usr/include/png.h:1146) [-Wdeprecated-declarations]
text_ptr[3].text = png_convert_to_rfc1123(png_ptr, &mod_time);
^
pngwriter.cc:1001:64: warning: 'const char*
png_convert_to_rfc1123(png_structrp, png_const_timep)' is deprecated
(declared at /usr/include/png.h:1146) [-Wdeprecated-declarations]
text_ptr[3].text = png_convert_to_rfc1123(png_ptr, &mod_time);
^
pngwriter.cc:1001:64: error: invalid conversion from 'png_const_charp
{aka const char*}' to 'png_charp {aka char*}' [-fpermissive]
hhblits.C: In function 'int main(int, char**)':
hhblits.C:2140:25: warning: ISO C++ does not support variable-length
array types [-Wvla]
format = new(int[bins]);
^
hhblits.C:2240:58: warning: ISO C++ does not support variable-length
array types [-Wvla]
dbfiles_new[ndb_new]=new(char[strlen(dbfiles_old[a])+1]);
^
pngwriter.cc: In member function 'void pngwriter::readfromfile(char*)':
pngwriter.cc:1297:105: error: cannot convert 'long unsigned int*' to
'png_uint_32* {aka unsigned int*}' for argument '3' to 'png_uint_32
png_get_IHDR(png_const_structrp, png_const_inforp, png_uint_32*,
png_uint_32*, int*, int*, int*, int*, int*)'
png_get_IHDR(png_ptr, info_ptr, &width, &height, &bit_depth,
&color_type, &interlace_type, NULL, NULL);
^
pngwriter.cc:1314:33: error: 'png_set_gray_1_2_4_to_8' was not
declared in this scope
png_set_gray_1_2_4_to_8(png_ptr); // Just an alias of the above.
^
pngwriter.cc:1345:103: error: cannot convert 'long unsigned int*' to
'png_uint_32* {aka unsigned int*}' for argument '3' to 'png_uint_32
png_get_IHDR(png_const_structrp, png_const_inforp, png_uint_32*,
png_uint_32*, int*, int*, int*, int*, int*)'
png_get_IHDR(png_ptr, info_ptr, &width, &height, &bit_depth,
&color_type, &interlace_type, NULL, NULL);
^
pngwriter.cc:1350:69: error: no matching function for call to
'pngwriter::read_png_image(FILE*&, png_struct*&, png_info*&, unsigned
char***, long unsigned int*, long unsigned int*)'
if(!read_png_image(fp, png_ptr, info_ptr, &image, &width, &height))
^
pngwriter.cc:1350:69: note: candidate is:
In file included from hhalign.C:104:0:
pngwriter.h:119:8: note: int pngwriter::read_png_image(FILE*,
png_structp, png_infop, png_byte***, png_uint_32*, png_uint_32*)
int read_png_image(FILE *fp, png_structp png_ptr, png_infop info_ptr,
^
pngwriter.h:119:8: note: no known conversion for argument 5 from
'long unsigned int*' to 'png_uint_32* {aka unsigned int*}'
In file included from /usr/include/pngconf.h:72:0,
from /usr/include/png.h:456,
from pngwriter.h:49,
from hhalign.C:104:
pngwriter.cc: In member function 'int pngwriter::read_png_info(FILE*,
png_struct**, png_info**)':
pngwriter.cc:1533:25: error: invalid use of incomplete type
'png_struct {aka struct png_struct_def}'
if (setjmp((*png_ptr)->jmpbuf)) /*(setjmp(png_jmpbuf(*png_ptr))
)*//////////////////////////////////////
^
In file included from pngwriter.h:49:0,
from hhalign.C:104:
/usr/include/png.h:555:16: error: forward declaration of 'png_struct
{aka struct png_struct_def}'
typedef struct png_struct_def png_struct;
^
hhalign.C: In function 'void ProcessArguments(int, char**)':
----
Best regards,
Nobuhiro
--
Nobuhiro Iwamatsu
iwamatsu at {nigauri.org / debian.org}
GPG ID: 40AD1FA6
--- End Message ---
--- Begin Message ---
Source: hhsuite
Source-Version: 2.0.16-2
We believe that the bug you reported is fixed in the latest version of
hhsuite, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Laszlo Kajan <[email protected]> (supplier of updated hhsuite package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 08 Sep 2014 19:32:43 +0200
Source: hhsuite
Binary: hhsuite hhsuite-doc hhsuite-data hhsuite-dbg
Architecture: source amd64
Version: 2.0.16-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Laszlo Kajan <[email protected]>
Description:
hhsuite - sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment
(
hhsuite-dbg - sensitive protein sequence searching based on HMM-HMM alignment (
hhsuite-doc - documentation for HHsuite for HMM-HMM comparisons
Closes: 742579
Changes:
hhsuite (2.0.16-2) unstable; urgency=low
.
[Steffen Moeller]
* Bumped standard to 3.9.4.
* Removed DMUA flag.
* Created new -doc package and moved user guide to it
* Moved scripts directory from hhsuite-data to hhsuite
* Added CHANGES file to .docs
* joined hardening patch with rest1
.
[Laszlo Kajan]
* Bumped standard to 3.9.5.
* Pulled 2.0.16-1 -> 2.0.16-1u1 changes from Ubuntu: arch all packages are
now amd64, since all arch dep packages are also amd64.
* Completed Steffen's changes.
* Removed libpng12-dev dependency by disabling png feature. (Closes: #742579)
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