Your message dated Thu, 20 Aug 2015 23:23:56 +0000
with message-id <[email protected]>
and subject line Bug#796259: fixed in bioperl 1.6.924-3
has caused the Debian Bug report #796259,
regarding bioperl: FTBFS with perl 5.22 (CGI build-dep)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
796259: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=796259
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bioperl
Version: 1.6.924-2
Severity: important
User: [email protected]
Usertags: perl-5.22-transition
Tags: sid stretch
This package FTBFS with perl 5.22 (currently in experimental), since CGI
has been removed from perl core:
# Failed test 'use Bio::DB::Query::HIVQuery;'
# at t/RemoteDB/HIV/HIVQuery.t line 12.
# Tried to use 'Bio::DB::Query::HIVQuery'.
# Error: Can't locate CGI.pm in @INC (you may need to install the CGI
module) (@INC contains: /«PKGBUILDDIR»/blib/lib /«PKGBUILDDIR»/blib/arch
/«PKGBUILDDIR» /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.0
/usr/local/share/perl/5.22.0 /usr/lib/x86_64-linux-gnu/perl5/5.22
/usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at
/«PKGBUILDDIR»/blib/lib/Bio/DB/Query/HIVQuery.pm line 212.
# BEGIN failed--compilation aborted at
/«PKGBUILDDIR»/blib/lib/Bio/DB/Query/HIVQuery.pm line 212.
# Compilation failed in require at t/RemoteDB/HIV/HIVQuery.t line 12.
# BEGIN failed--compilation aborted at t/RemoteDB/HIV/HIVQuery.t line 12.
Can't locate object method "new" via package "Bio::DB::Query::HIVQuery" at
t/RemoteDB/HIV/HIVQuery.t line 21.
# Looks like you planned 41 tests but ran 6.
# Looks like you failed 1 test of 6 run.
# Looks like your test exited with 255 just after 6.
t/RemoteDB/HIV/HIVQuery.t ..............
1..41
not ok 1 - use Bio::DB::Query::HIVQuery;
The fix is to add (build)-dependencies on
libcgi-pm-perl | perl (<< 5.19)
This bug will become release critical nearer the time of the perl 5.22
migration, expected during the (northern hemisphere) summer.
Cheers,
Dominic.
--- End Message ---
--- Begin Message ---
Source: bioperl
Source-Version: 1.6.924-3
We believe that the bug you reported is fixed in the latest version of
bioperl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bioperl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 20 Aug 2015 23:11:32 +0200
Source: bioperl
Binary: bioperl libbio-perl-perl
Architecture: source all
Version: 1.6.924-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
bioperl - Perl tools for computational molecular biology
libbio-perl-perl - BioPerl core perl modules
Closes: 796259
Changes:
bioperl (1.6.924-3) unstable; urgency=medium
.
* Fix FTBFS with perl 5.22
Closes: #796259
* Standards-Version: 3.9.6
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