Your message dated Fri, 9 Oct 2015 10:37:17 +0200
with message-id <[email protected]>
and subject line Re: [Debichem-devel] Bug#778030: nwchem: ftbfs with GCC-5
has caused the Debian Bug report #778030,
regarding nwchem: ftbfs with GCC-5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
778030: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=778030
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:nwchem
Version: 6.5+r26243-4
Severity: normal
Tags: sid stretch
User: [email protected]
Usertags: ftbfs-gcc-5
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The
severity of this report may be raised before the stretch release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc5-20150205/nwchem_6.5+r26243-4_unstable_gcc5.log
The last lines of the build log are at the end of this report.
To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t experimental install g++
Common build failures are C11 as the default C mode, new warnings
resulting in build failures with -Werror turned on, or new/dropped
symbols in Debian symbols files. For other C/C++ related build failures
see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html
[...]
integer spctagsum, spctagpoint
^
Warning: 'spctagpoint' may be used uninitialized in this function
[-Wmaybe-uninitialized]
gibbs.F:1462:0:
logical new_markov_chain
^
Warning: 'new_markov_chain' is used uninitialized in this function
[-Wuninitialized]
Got lock on /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdntmc.lock
ar r /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdntmc.a dntmc_input.o
dntmc_setgeom.o gibbs.o
ar: creating /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdntmc.a
echo /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdntmc.a
/«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdntmc.a
Making libraries in dangchang
gfortran -c -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -g -fno-aggressive-loop-optimizations -g
-O -I. -I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG dc_initialize.F
gfortran -c -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -g -fno-aggressive-loop-optimizations -g
-O -I. -I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG dc_setgeom.F
gfortran -c -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -ffast-math -Wuninitialized
-fno-aggressive-loop-optimizations -O3 -I.
-I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG dc_energy.F
Got lock on /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdangchang.lock
ar r /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdangchang.a dc_initialize.o
dc_setgeom.o dc_energy.o
ar: creating /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdangchang.a
echo /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdangchang.a
/«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libdangchang.a
Making libraries in ccca
gfortran -c -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -g -fno-aggressive-loop-optimizations -g
-O -I. -I../basis -I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG task_ccca.F
gfortran -c -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -g -fno-aggressive-loop-optimizations -g
-O -I. -I../basis -I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG ccca_utils.F
Got lock on /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libccca.lock
ar r /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libccca.a task_ccca.o
ccca_utils.o
ar: creating /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libccca.a
echo /«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libccca.a
/«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64/libccca.a
make nwchem.o stubs.o
gfortran -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -g -fno-aggressive-loop-optimizations -g
-O -I. -I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG -DCOMPILATION_DATE="'`date +%a_%b_%d_%H:%M:%S_%Y`'"
-DCOMPILATION_DIR="'/«BUILDDIR»/nwchem-6.5+r26243'" -DNWCHEM_BRANCH="'6.5'"
-c -o nwchem.o nwchem.F
gfortran -g -O2 -ffast-math -fno-aggressive-loop-optimizations -ffast-math
-Warray-bounds -fdefault-integer-8 -O2 -g -fno-aggressive-loop-optimizations -g
-O -I. -I/«BUILDDIR»/nwchem-6.5+r26243/src/include
-I/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/include -DLINUX -DGCC4
-DGCC46 -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DGCC46 -DEXT_INT -DLINUX
-DLINUX64 -DPARALLEL_DIAG -DCOMPILATION_DATE="'`date +%a_%b_%d_%H:%M:%S_%Y`'"
-DCOMPILATION_DIR="'/«BUILDDIR»/nwchem-6.5+r26243'" -DNWCHEM_BRANCH="'6.5'"
-c -o stubs.o stubs.F
gfortran -Wl,--export-dynamic -L/«BUILDDIR»/nwchem-6.5+r26243/lib/LINUX64
-L/«BUILDDIR»/nwchem-6.5+r26243/src/tools/install/lib -o
/«BUILDDIR»/nwchem-6.5+r26243/bin/LINUX64/nwchem nwchem.o stubs.o -lnwctask
-lccsd -lmcscf -lselci -lmp2 -lmoints -lstepper -ldriver -loptim -lnwdft
-lgradients -lcphf -lesp -lddscf -ldangchang -lguess -lhessian -lvib -lnwcutil
-lrimp2 -lproperty -lsolvation -lnwints -lprepar -lnwmd -lnwpw -lofpw -lpaw
-lpspw -lband -lnwpwlib -lnwxc -lcafe -lspace -lanalyze -lqhop -lpfft -ldplot
-lnwpython -ldrdy -lvscf -lqmmm -lqmd -letrans -lpspw -ltce -lbq -lcons -lperfm
-ldntmc -lccca -lnwcutil -lga -larmci -lpeigs -lperfm -lcons -lbq -lnwcutil
-llapack -lblas -llapack -lblas
/usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.a -lblas -llapack
-llapack -lblas -L/usr/lib -lmpi -lmpi_f77 -lpython2.7 -lpthread -ldl
-lutil -lm -lz -lnwcutil -lnwcutil -lpthread -lutil -ldl -lz
lto1: fatal error: bytecode stream generated with LTO version 3.0 instead of
the expected 4.0
compilation terminated.
lto-wrapper: fatal error: gfortran returned 1 exit status
compilation terminated.
/usr/bin/ld: lto-wrapper failed
collect2: error: ld returned 1 exit status
make[2]: *** [all] Error 1
GNUmakefile:41: recipe for target 'all' failed
make[2]: Leaving directory '/«BUILDDIR»/nwchem-6.5+r26243/src'
make[1]: *** [override_dh_auto_build-arch] Error 2
debian/rules:65: recipe for target 'override_dh_auto_build-arch' failed
make[1]: Leaving directory '/«BUILDDIR»/nwchem-6.5+r26243'
make: *** [build-arch] Error 2
debian/rules:62: recipe for target 'build-arch' failed
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--- End Message ---
--- Begin Message ---
Hi,
On Thu, Feb 12, 2015 at 10:34:58AM +0000, Matthias Klose wrote:
> Package: src:nwchem
> Version: 6.5+r26243-4
> Severity: normal
> Tags: sid stretch
> User: [email protected]
> Usertags: ftbfs-gcc-5
The latest upload of NWChem builds fine in unstable now, closing this.
Michael
--- End Message ---
