Your message dated Fri, 06 Nov 2015 13:26:46 +0000
with message-id <[email protected]>
and subject line Bug#804223: fixed in r-bioc-variantannotation 1.16.3-1
has caused the Debian Bug report #804223,
regarding r-bioc-variantannotation: FTBFS: Error : objects 'FilterRules',
'seqsplit', 'FilterMatrix', 'subsetByFilter' are not exported by
'namespace:IRanges'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
804223: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804223
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-bioc-variantannotation
Version: 1.14.13-1
Severity: serious
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
X-Debbugs-Cc: [email protected]
Dear Maintainer,
r-bioc-variantannotation fails to build from source in unstable/amd64:
[..]
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'IRanges::FilterRules' when
loading 'VariantAnnotation'
Warning: replacing previous import by 'IRanges::FilterMatrix' when
loading 'VariantAnnotation'
Error : objects 'FilterRules', 'seqsplit', 'FilterMatrix',
'subsetByFilter' are not exported by 'namespace:IRanges'
ERROR: lazy loading failed for package 'VariantAnnotation'
* removing
'/build/r-bioc-variantannotation-1.14.13/debian/r-bioc-variantannotation/usr/lib/R/site-library/VariantAnnotation'
/usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch'
failed
make: *** [R_any_arch] Error 1
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit
status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/r-bioc-variantannotation_1.14.13-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
r-bioc-variantannotation.1.14.13-1.unstable.amd64.log.txt.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: r-bioc-variantannotation
Source-Version: 1.16.3-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-variantannotation, which is due to be installed in the Debian FTP
archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated r-bioc-variantannotation
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 06 Nov 2015 13:08:13 +0100
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation
Architecture: source amd64
Version: 1.16.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
r-bioc-variantannotation - BioConductor annotation of genetic variants
Closes: 804223
Changes:
r-bioc-variantannotation (1.16.3-1) unstable; urgency=medium
.
* New upstream version
Closes: #804223
Checksums-Sha1:
dca8c2a11de8da15faaade2e952ca84dbb2d3612 2275
r-bioc-variantannotation_1.16.3-1.dsc
415837d0b05c5b1b20471aad6e3b0d2390f28e3f 1311936
r-bioc-variantannotation_1.16.3.orig.tar.gz
4b04233b2baa7229b5e5bd48e3db10bed6d1ac42 7148
r-bioc-variantannotation_1.16.3-1.debian.tar.xz
465c2e854edcefaaf614345d58b0eaa15538dab3 1863508
r-bioc-variantannotation_1.16.3-1_amd64.deb
Checksums-Sha256:
635f2bf0e7783f5380872e2b16d121cf0fb7bf3c1b834caffcbc7ae590cdf4bc 2275
r-bioc-variantannotation_1.16.3-1.dsc
2625dd1a9afa55dd888b761f09476d39abfecfbdc553894329e71695e15d8f42 1311936
r-bioc-variantannotation_1.16.3.orig.tar.gz
56f030ae17d94eb321b246924294600502c45961fdcdc35612ad6ce4065e54d4 7148
r-bioc-variantannotation_1.16.3-1.debian.tar.xz
d8c054b01f9d6c5b41f269f4dba6562d07ca090e013135bb0cd662b9e89047ee 1863508
r-bioc-variantannotation_1.16.3-1_amd64.deb
Files:
bc6f7dcf591ef4b19afddd8becd29aa0 2275 gnu-r optional
r-bioc-variantannotation_1.16.3-1.dsc
cef655eec3d3653207588f053bdb2257 1311936 gnu-r optional
r-bioc-variantannotation_1.16.3.orig.tar.gz
2d67a777fb698f2dadfd7ffb90b80bb9 7148 gnu-r optional
r-bioc-variantannotation_1.16.3-1.debian.tar.xz
16b55ba50c64af1b9717a79e3501ffad 1863508 gnu-r optional
r-bioc-variantannotation_1.16.3-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1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=mvmg
-----END PGP SIGNATURE-----
--- End Message ---
