Your message dated Wed, 25 Nov 2015 18:05:02 +0000
with message-id <[email protected]>
and subject line Bug#758987: fixed in qiime 1.9.1+dfsg-1
has caused the Debian Bug report #758987,
regarding qiime: Can't upgrade - pynast 1.2.2 does not exist
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
758987: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=758987
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: qiime
Version: 1.8.0+dfsg-2
Severity: normal
Dear Maintainer Folks,
I am trying to upgrade qiime to 1.8.0+dfsg-4, but I get:
qiime : Depends: pynast (>= 1.2.2) but 1.2-1 is to be installed
and:
# apt-show-versions -a pynast
pynast 1.2-1 install ok installed
pynast 1.1-3 stable ftp.debian.org
pynast 1.2-1 testing ftp.debian.org
pynast 1.2-1 unstable ftp.debian.org
pynast/testing uptodate 1.2-1
(which is also what packages.debian.org reports)
I also see the following on packages.debian.org:
testing migration
excuses:
9 days old (needed 5 days)
qiime/i386 unsatisfiable Depends: pynast (>= 1.2.2)
qiime/amd64 unsatisfiable Depends: pynast (>= 1.2.2)
qiime/armel unsatisfiable Depends: pynast (>= 1.2.2)
qiime/armhf unsatisfiable Depends: pynast (>= 1.2.2)
qiime/kfreebsd-amd64 unsatisfiable Depends: pynast (>= 1.2.2)
qiime/kfreebsd-i386 unsatisfiable Depends: pynast (>= 1.2.2)
qiime/mips unsatisfiable Depends: pynast (>= 1.2.2)
qiime/mipsel unsatisfiable Depends: pynast (>= 1.2.2)
qiime/powerpc unsatisfiable Depends: pynast (>= 1.2.2)
qiime/s390x unsatisfiable Depends: pynast (>= 1.2.2)
Valid candidate
so perhaps you already know about this.
Thanks much/best,
--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory
-- System Information:
Debian Release: 7.6
APT prefers stable
APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-4-amd64 (SMP w/64 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages qiime depends on:
ii king 2.21.120420-2
ii libc6 2.19-9
ii libffi6 3.1-2
ii libgmp10 2:6.0.0+dfsg-6
ii pynast 1.2-1
ii python 2.7.8-1
ii python-biom-format 2.1+dfsg-1
ii python-cogent 1.5.3-2
ii python-qcli 0.1.0-1
Versions of packages qiime recommends:
pn ampliconnoise <none>
ii blast2 1:2.2.26.20120620-2
pn cd-hit <none>
pn chimeraslayer <none>
pn fasttree <none>
pn infernal <none>
ii libjs-jquery 1.7.2+dfsg-1
ii muscle 1:3.8.31-1
ii python-matplotlib 1.3.1-2
pn python-mpi4py <none>
ii python-numpy 1:1.8.2-1
Versions of packages qiime suggests:
pn cytoscape <none>
pn rdp-classifier <none>
pn t-coffee <none>
pn torque-client <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: qiime
Source-Version: 1.9.1+dfsg-1
We believe that the bug you reported is fixed in the latest version of
qiime, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated qiime package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 25 Nov 2015 17:07:33 +0100
Source: qiime
Binary: qiime qiime-doc qiime-data
Architecture: source all amd64
Version: 1.9.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
qiime - Quantitative Insights Into Microbial Ecology
qiime-data - Quantitative Insights Into Microbial Ecology (supporting data)
qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial)
Closes: 758987 806101
Changes:
qiime (1.9.1+dfsg-1) unstable; urgency=medium
.
* Take over changes from BioLinux for new upstream version
* adapt d/watch and get-orig-source target to new uscan
* cme fix dpkg-control
* Remove denoiser from d/control since there is no such package
any more
* DEP5 fixes
* Add lintian override for false positive about JS without source
* Enable building arch independent packages separately
Closes: #806101
* This upload also
Closes: #758987
Checksums-Sha1:
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qiime-data_1.9.1+dfsg-1_all.deb
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Checksums-Sha256:
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qiime_1.9.1+dfsg-1.dsc
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qiime_1.9.1+dfsg.orig.tar.xz
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qiime-data_1.9.1+dfsg-1_all.deb
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qiime_1.9.1+dfsg-1_amd64.deb
Files:
7436fcfc0fb4de61eadbbf9761c7472a 2272 science optional qiime_1.9.1+dfsg-1.dsc
8a9688f16fb61dbaefdbf44d8daf2018 11056872 science optional
qiime_1.9.1+dfsg.orig.tar.xz
49e259648e6847160160e0361acdc87c 24952 science optional
qiime_1.9.1+dfsg-1.debian.tar.xz
fda07045967b54cfd94f40c98364adf9 1367038 science optional
qiime-data_1.9.1+dfsg-1_all.deb
3f23345af6e20acb8af32fac7c4f43c7 6060910 doc optional
qiime-doc_1.9.1+dfsg-1_all.deb
a4c5badf4a5e37c6ff310e02a2ccb4f8 895152 science optional
qiime_1.9.1+dfsg-1_amd64.deb
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