Your message dated Thu, 26 Nov 2015 19:34:12 +0000
with message-id <[email protected]>
and subject line Bug#806222: fixed in pdb2pqr 2.0.0+dfsg-2
has caused the Debian Bug report #806222,
regarding pdb2pqr: FTBFS when built with dpkg-buildpackage -A (Directory
nonexistent)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
806222: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806222
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:pdb2pqr
Version: 2.0.0+dfsg-1
User: [email protected]
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with python2
dh_testdir -i
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/pdb2pqr-2.0.0+dfsg'
dh_auto_configure
python scons/scons.py \
URL="http://localhost/pdb2pqr/"; \
PREFIX="/usr/share/pdb2pqr"
scons: Reading SConscript files ...
scons: done reading SConscript files.
scons: Building targets ...
[... snipped ...]
For example: "/opt/bin/python scons/scons.py" will setup pdb2pqr to be run with
/opt/bin/python
Run "python scons/scons.py install" to install pdb2pqr in /usr/share/pdb2pqr/
Run "python scons/scons.py basic-test" for a basic functionality test
Run "python scons/scons.py advanced-test" for a single test of ligand and
PROPKA support. Requires numpy and PDB2PKA support compiled.
Run "python scons/scons.py complete-test" for a complete test of all
functionality EXCEPT PDB2PKA. Requires numpy and PDB2PKA support compiled.
Run "python scons/scons.py pdb2pka-test" for a simple test of PDB2PKA
functionality.
Requires numpy, PDB2PKA support compiled AND the APBS python libraries
compiled and installed in the pdb2pka directory.
To setup a web service create a symbolic link to /usr/share/pdb2pqr/ that
enables you to view http://localhost/pdb2pqr/ after running "scons/scons.py
install"
Run "python scons/scons.py msvs" to build Visual Studio projects for the
Algorithms and pMC_mult modules.
VS project generation is not well supported in scons. Resulting projects should
build using NMAKE but cannot be used for debugging.
The resulting projects will need to modified to use VS natively to compile the
code or debug.
Build succeeded.
( cd pdb2pka && \
cp -a pMC_mult_wrap.cpp pMC_mult_wrap.cpp.saved && \
cp -a pMC_mult.py pMC_mult.py.saved && \
swig -c++ -python -o pMC_mult_wrap.cpp pMC_mult.i )
make[1]: Leaving directory '/<<BUILDDIR>>/pdb2pqr-2.0.0+dfsg'
dh_auto_build -i
dh_auto_test -i
fakeroot debian/rules binary-indep
dh binary-indep --with python2
dh_testroot -i
dh_prep -i
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/pdb2pqr-2.0.0+dfsg'
for app in /usr/share/pdb2pqr/pdb2pqr.py /usr/share/pdb2pqr/src/psize.py; do \
sed -e "s,@SCRIPT@,${app}," debian/wrapper.sh \
>debian/pdb2pqr/usr/bin/$(basename ${app} .py) && \
chmod 0755 debian/pdb2pqr/usr/bin/$(basename ${app} .py); \
done
/bin/sh: 2: cannot create debian/pdb2pqr/usr/bin/pdb2pqr: Directory nonexistent
/bin/sh: 2: cannot create debian/pdb2pqr/usr/bin/psize: Directory nonexistent
debian/rules:43: recipe for target 'override_dh_auto_install' failed
make[1]: *** [override_dh_auto_install] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/pdb2pqr-2.0.0+dfsg'
debian/rules:15: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Sorry not to have a fix, as I am reporting many bugs similar to
this one.
In this case, I see that you are using "dh", which allow
(independently) optional targets override_dh_foo-arch and
override_dh_foo-indep (for several values of "foo").
Maybe using them this problem could be fixed.
Once that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B" work
properly, the package would be suitable to be uploaded in source-only
form if you wish.
Thanks.
--- End Message ---
--- Begin Message ---
Source: pdb2pqr
Source-Version: 2.0.0+dfsg-2
We believe that the bug you reported is fixed in the latest version of
pdb2pqr, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated pdb2pqr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 26 Nov 2015 20:08:19 +0100
Source: pdb2pqr
Binary: pdb2pqr pdb2pqr-doc
Architecture: source all amd64
Version: 2.0.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
pdb2pqr - Preparation of protein structures for electrostatics calculations
pdb2pqr-doc - example files accompanying pdb2pqr
Closes: 806222
Changes:
pdb2pqr (2.0.0+dfsg-2) unstable; urgency=medium
.
* Enable building arch independent packages separately
Closes: #806222
* Remove obsolete debian/pycompat
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