Your message dated Sat, 05 Dec 2015 23:40:04 +0000
with message-id <[email protected]>
and subject line Bug#772255: fixed in flexbar 2.50-2
has caused the Debian Bug report #772255,
regarding flexbar: bashism in /bin/sh script
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
772255: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=772255
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: flexbar
Severity: minor
Version: 2.50-1
User: [email protected]
Usertags: goal-dash
Hi,
I've ran checkbashisms (from the 'devscripts' package) over the whole
archive and I found that your package has a /bin/sh script that uses a
"bashism".
checkbashisms' output:
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfasta.sh line 10
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfasta.sh line 23
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfasta.sh line 36
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfasta.sh line 49
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfasta.sh line 62
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfastq.sh line 10
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfastq.sh line 23
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfastq.sh line 36
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfastq.sh line 49
> (exit|return with negative status code):
> exit -1
> possible bashism in
> ./usr/share/doc/flexbar/examples/flexbar_test_csfastq.sh line 62
> (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
> line 10 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
> line 23 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
> line 36 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
> line 49 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
> line 62 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
> line 10 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
> line 23 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
> line 36 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
> line 49 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
> line 62 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_zip.sh
> line 10 (exit|return with negative status code):
> exit -1
> possible bashism in ./usr/share/doc/flexbar/examples/flexbar_test_zip.sh
> line 23 (exit|return with negative status code):
> exit -1
Not using bash (or a Debian Policy compliant shell interpreter that doesn't
provide such an extra feature) as /bin/sh is likely to lead to errors or
unexpected behaviours. Please be aware that dash is the default /bin/sh.
Please closely examine the above output and the script, and determine
what the proper severity of the bug is, and adjust it accordingly. If
it's important or greater please hurry to get this fixed for jessie.
Hints about how to fix bashisms can be found at:
https://wiki.ubuntu.com/DashAsBinSh
Thanks in advance,
Raphael Geissert
--- End Message ---
--- Begin Message ---
Source: flexbar
Source-Version: 2.50-2
We believe that the bug you reported is fixed in the latest version of
flexbar, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated flexbar package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 05 Dec 2015 23:31:13 +0100
Source: flexbar
Binary: flexbar
Architecture: source amd64
Version: 2.50-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
flexbar - flexible barcode and adapter removal for sequencing platforms
Closes: 772255
Changes:
flexbar (2.50-2) unstable; urgency=medium
.
* Fix bashisms in tests
Closes: #772255
* cme fix dpkg-control
* exclude false lintian positives
* d/control: do not mention removed file
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--- End Message ---
