Your message dated Wed, 09 Dec 2015 18:00:51 +0000
with message-id <[email protected]>
and subject line Bug#806103: fixed in relion 1.4+dfsg-1
has caused the Debian Bug report #806103,
regarding relion: FTBFS when built with dpkg-buildpackage -A (No such file or
directory)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
806103: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806103
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:relion
Version: 1.3+dfsg-3
User: [email protected]
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
fakeroot debian/rules binary-indep
Relion API Version = 1.3
Relion most recent (current) lib interface = 1
dh binary-indep --parallel --with autoreconf
dh_testroot -i -O--parallel
debian/rules override_dh_prep
make[1]: Entering directory '/<<BUILDDIR>>/relion-1.3+dfsg'
Relion API Version = 1.3
Relion most recent (current) lib interface = 1
# We don't want debian/tmp to be removed again ...
dh_prep -X debian/tmp
make[1]: Leaving directory '/<<BUILDDIR>>/relion-1.3+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/relion-1.3+dfsg'
Relion API Version = 1.3
Relion most recent (current) lib interface = 1
dh_install
# relion_qsub.csh should just go to GUI d/examples
find debian/relion-bi*/usr/bin -name relion_qsub.csh -delete
find: `debian/relion-bi*/usr/bin': No such file or directory
debian/rules:74: recipe for target 'override_dh_install' failed
make[1]: *** [override_dh_install] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/relion-1.3+dfsg'
debian/rules:35: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Sorry not to have a fix, as I am reporting many bugs similar to
this one, but I can give some general hints:
* If all the arch-independent packages are dummy transitional packages
released with jessie, the easy fix is to drop them now.
* If not, debian/rules should be modified so that the binary-indep
target works in all cases, even when binary-arch is not used (this is
what the "Architecture: all" autobuilder does). For that:
* If you are using debhelper, you might want to use options -a and -i
for dh_* commands so that they do not act on packages they do not
have to act.
* Also, if you are using dh, the (independently) optional targets
override_dh_foo-arch and override_dh_foo-indep (for several values
of "foo") may be useful to write a debian/rules which behaves exactly
as desired.
After checking that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B"
work properly, this package will be suitable to be uploaded in
source-only form if you wish (you might want to try it).
Thanks.
--- End Message ---
--- Begin Message ---
Source: relion
Source-Version: 1.4+dfsg-1
We believe that the bug you reported is fixed in the latest version of
relion, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Roland Fehrenbacher <[email protected]> (supplier of updated relion package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 08 Dec 2015 19:04:50 +0100
Source: relion
Binary: relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui
librelion-dev-common librelion-dev librelion+mpi-dev librelion+gui-dev
librelion+mpi+gui-dev librelion-1.4-1 librelion+mpi-1.4-1 librelion+gui-1.4-1
librelion+mpi+gui-1.4-1
Architecture: source amd64 all
Version: 1.4+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Roland Fehrenbacher <[email protected]>
Description:
librelion+gui-1.4-1 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion+mpi+gui-1.4-1 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+mpi+gui-dev - C++ API for RELION (3D reconstructions in
cryo-electron microscop
librelion+mpi-1.4-1 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+mpi-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron
micr
librelion-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion-dev-common - C++ API for RELION (3D reconstructions in cryo-electron
microscop
relion-bin - toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui - parallel toolkit for 3D reconstructions in cryo-electron
microsco
relion-bin+mpi - parallel toolkit for 3D reconstructions in cryo-electron
microsco
relion-bin+mpi+gui - parallel toolkit for 3D reconstructions in cryo-electron
microsco
Closes: 797825 806103
Changes:
relion (1.4+dfsg-1) unstable; urgency=medium
.
[ Roland Fehrenbacher ]
* New upstream version 1.4
* Bug fix: "file conflicts between librelion{+mpi}{+gui}-1.3-1{v5}
packages", thanks to Ralf Treinen (Closes: #797825).
.
[ Andreas Tille ]
* Enable building architecture independant files separately
Closes: #806103
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