Your message dated Thu, 10 Dec 2015 05:24:49 +0000
with message-id <[email protected]>
and subject line Bug#806084: fixed in ncbi-tools6 6.1.20120620-9
has caused the Debian Bug report #806084,
regarding ncbi-tools6: FTBFS when built with dpkg-buildpackage -A (No such file
or directory)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
806084: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806084
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:ncbi-tools6
Version: 6.1.20120620-8
User: [email protected]
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
fakeroot debian/rules binary-indep
dh binary-indep
dh_testroot -i
dh_prep -i
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d debian/tmp/usr/lib/x86_64-linux-gnu
install -m 644 lib/* shlib/*.so.6.1.20120620 debian/tmp/usr/lib/x86_64-linux-gnu
for x in ncbiacc ncbiCacc netentr; do \
rm -f debian/tmp/usr/lib/x86_64-linux-gnu/lib$x.so.6.1.20120620 && \
ln -s libncbiNacc.so.6 \
debian/tmp/usr/lib/x86_64-linux-gnu/lib$x.so.6 && \
ln -s libncbiNacc.so debian/tmp/usr/lib/x86_64-linux-gnu/lib$x.so; \
done
for x in ncbicn3d vibrant; do \
rm -f debian/tmp/usr/lib/x86_64-linux-gnu/lib$x.so.6.1.20120620 && \
ln -s lib${x}OGL.so.6 \
debian/tmp/usr/lib/x86_64-linux-gnu/lib$x.so.6 && \
ln -s lib${x}OGL.so debian/tmp/usr/lib/x86_64-linux-gnu/lib$x.so; \
done
rm -f debian/tmp/usr/lib/x86_64-linux-gnu/libregexp.*
cd debian/tmp/usr/lib/x86_64-linux-gnu && \
[... snipped ...]
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs
install -m 644 config/README \
debian/libncbi6/usr/share/doc/libncbi6/README.config
install: cannot create regular file
'debian/libncbi6/usr/share/doc/libncbi6/README.config': No such file or
directory
debian/rules:215: recipe for target 'override_dh_installdocs' failed
make[1]: *** [override_dh_installdocs] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:82: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Sorry not to have a fix, as I am reporting many bugs similar to
this one, but I can give some general hints:
* If all the arch-independent packages are dummy transitional packages
released with jessie, the easy fix is to drop them now.
* If not, debian/rules should be modified so that the binary-indep
target works in all cases, even when binary-arch is not used (this is
what the "Architecture: all" autobuilder does). For that:
* If you are using debhelper, you might want to use options -a and -i
for dh_* commands so that they do not act on packages they do not
have to act.
* Also, if you are using dh, the (independently) optional targets
override_dh_foo-arch and override_dh_foo-indep (for several values
of "foo") may be useful to write a debian/rules which behaves exactly
as desired.
After checking that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B"
work properly, this package will be suitable to be uploaded in
source-only form if you wish (you might want to try it).
Thanks.
--- End Message ---
--- Begin Message ---
Source: ncbi-tools6
Source-Version: 6.1.20120620-9
We believe that the bug you reported is fixed in the latest version of
ncbi-tools6, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated ncbi-tools6 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 09 Dec 2015 23:52:45 -0500
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dev libncbi6-dbg ncbi-data ncbi-rrna-data
ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6b libvibrant6-dev
libvibrant6b-dbg
Architecture: source
Version: 6.1.20120620-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Description:
blast2 - Basic Local Alignment Search Tool
libncbi6 - NCBI libraries for biology applications
libncbi6-dbg - NCBI libraries for biology applications (debugging symbols)
libncbi6-dev - NCBI libraries for biology applications (development files)
libvibrant6-dev - NCBI libraries for graphic biology applications (development
file
libvibrant6b - NCBI libraries for graphic biology applications
libvibrant6b-dbg - NCBI libraries for graphic biology applications (debugging
symbol
ncbi-data - Platform-independent data for the NCBI toolkit
ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Closes: 806084
Changes:
ncbi-tools6 (6.1.20120620-9) unstable; urgency=medium
.
* debian/control: Split most of Build-Depends into Build-Depends-Arch.
* debian/makemenu: Elide menu entries, and potentially entire menu
files, when .desktop(.in) files cover the same apps. (See #741573.)
* debian/rules:
- Fix and streamline builds covering only the architecture-independent
(*-data) packages. (Closes: #806084.)
- Arrange to define BUILD_{DATE,TIME} based on the last changelog entry.
- clean: chmod -x private scripts, for compatibility with dgit.
* debian/sbtedit.desktop.in: Add a menu entry for sbtedit, accidentally
missed earlier.
* {demo,sequin}/*.c: Favor BUILD_{DATE,TIME} over __DATE__ and __TIME__
for the sake of reproducibility.
* doc/man/sbtedit.1: Fix some minor typos.
Checksums-Sha1:
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baff84bb2047b96e97da3d033d351573caef1d7d 140863
ncbi-tools6_6.1.20120620-9.diff.gz
Checksums-Sha256:
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ncbi-tools6_6.1.20120620-9.diff.gz
Files:
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ncbi-tools6_6.1.20120620-9.dsc
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