Your message dated Fri, 18 Dec 2015 23:24:51 +0000
with message-id <[email protected]>
and subject line Bug#788068: fixed in libsbml 5.12.0+dfsg-1
has caused the Debian Bug report #788068,
regarding package libsbml FTBFS on mipsel
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
788068: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=788068
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: libsbml
Version: 5.10.0+dfsg-1
Severity: serious
Tags: sid
User: [email protected]
Usertags: mips-patch
Package libsbml_5.10.0+dfsg-1 FTBFS on mipsel with following message:
Build killed with signal TERM after 150 minutes of inactivity
https://buildd.debian.org/status/fetch.php?pkg=libsbml&arch=mipsel&ver=5.10.0%2Bdfsg-1&stamp=1410908364
Package timeout on loongson based MIPS build boards.
We have successfully built libsbml using -O1 optimization level.
-O1 is used for mips/mipsel, for critical part of package.
The patch is attached.
With this patch we was able to build package on lemote loongson 3a.
Could you please include this patch?
Thank you!
Regards,
Jurica
diff -upNr libsbml-5.10.0+dfsg-old/debian/rules libsbml-5.10.0+dfsg-new/debian/rules
--- libsbml-5.10.0+dfsg-old/debian/rules 2014-08-27 13:34:23.000000000 +0200
+++ libsbml-5.10.0+dfsg-new/debian/rules 2015-05-29 00:15:27.410301574 +0200
@@ -18,6 +18,10 @@ ifdef BIND_MATLAB
CMAKE_OPTS := $(shell cat debian/cmake_opts)
endif
+ifneq (,$(filter $(DEB_HOST_ARCH), mips mipsel))
+CMAKE_OPTS += -D'WITH_01_COMPILE:BOOL=ON'
+endif
+
### let's do it ###
DEB_COMPRESS_EXCLUDE = .pdf
diff -upNr libsbml-5.10.0+dfsg-old/src/bindings/perl/CMakeLists.txt libsbml-5.10.0+dfsg-new/src/bindings/perl/CMakeLists.txt
--- libsbml-5.10.0+dfsg-old/src/bindings/perl/CMakeLists.txt 2015-05-29 00:17:39.000000000 +0200
+++ libsbml-5.10.0+dfsg-new/src/bindings/perl/CMakeLists.txt 2015-05-29 00:16:43.652489626 +0200
@@ -149,6 +149,12 @@ ADD_CUSTOM_COMMAND(
add_custom_target(binding_perl_swig ALL DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/LibSBML_wrap.cpp ${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pod)
+if (WITH_01_COMPILE)
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O1")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O1")
+ set (CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O1")
+ set (CMAKE_C_FLAGS_RELEASE "${CMAKE_C_FLAGS_RELEASE} -O1")
+endif(WITH_01_COMPILE)
#
# Determine the perl installation directory
--- End Message ---
--- Begin Message ---
Source: libsbml
Source-Version: 5.12.0+dfsg-1
We believe that the bug you reported is fixed in the latest version of
libsbml, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libsbml package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 18 Dec 2015 18:13:10 +0100
Source: libsbml
Binary: libsbml5-dev libsbml5-dbg libsbml5 libsbml5-python libsbml5-java
libsbml5-perl libsbml5-octave libsbml5-cil libsbml5-examples libsbml5-doc
libsbml5-cil-doc libsbml5-java-doc libsbml5-perl-doc libsbml5-python-doc
Architecture: source all amd64
Version: 5.12.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
libsbml5 - System Biology Markup Language library
libsbml5-cil - System Biology Markup Language library - CLI bindings
libsbml5-cil-doc - System Biology Markup Language library -- CLI documentation
libsbml5-dbg - System Biology Markup Language library - debug symbols
libsbml5-dev - System Biology Markup Language library - development files
libsbml5-doc - System Biology Markup Language library -- documentation
libsbml5-examples - System Biology Markup Language library -- example files
libsbml5-java - System Biology Markup Language library - Java bindings
libsbml5-java-doc - System Biology Markup Language library -- Java
documentation
libsbml5-octave - System Biology Markup Language library - Octave bindings
libsbml5-perl - System Biology Markup Language library - Perl bindings
libsbml5-perl-doc - System Biology Markup Language library -- Perl
documentation
libsbml5-python - System Biology Markup Language library - Python bindings
libsbml5-python-doc - System Biology Markup Language library -- Python
documentation
Closes: 788068 793256 805584
Changes:
libsbml (5.12.0+dfsg-1) unstable; urgency=medium
.
[ Ivo Maintz ]
* New upstream version
* debian/*doc-base: added doc-base integration for the *doc packages
* debian/control.in: fixed some spelling errors
* debian/libsbml5-octave.install: turned into a script to install into the
right location
* debian/rules: use octave itself do set OCTAVE_PATH
debian/libsbml5-octave.links.* are obsolete
install index.html to the proper location
remove wastful *.md5 files
* set executable rights on debian/libsbml5-octave.install to let it work
also in svn-buildpackage
.
[ Andreas Tille ]
* According to https://lists.debian.org/debian-bsd/2014/09/msg00133.html
libsbml requires openjdk - so we drop all alternatives from the
dependency list
* forward port patch to build on mipsel (thanks to Jurica Stanojkovic
<[email protected]> for the original patch)
Closes: #788068
* forward port patch to build with SWIG 3.x (thanks to Logan Rosen
<[email protected]> for the original patch)
Closes: #805584
* Rebuild successfully using gcc-5
Closes: #793256
* Do not Build-Depend from transitional package mono-gmcs but rather mono-mcs
* move packaging from SVN to Git
* cme fix dpkg-control
* make fiddling around with debian/control due to matlab the exception
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